Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3519 and GFF3520 are separated by 63 nucleotides GFF3520 and GFF3521 are separated by 24 nucleotides GFF3521 and GFF3522 overlap by 4 nucleotides GFF3522 and GFF3523 overlap by 4 nucleotides GFF3523 and GFF3524 are separated by 69 nucleotides
GFF3519 - Transcriptional regulator, LysR family, at 404,363 to 405,295
GFF3519
GFF3520 - hypothetical protein, at 405,359 to 405,592
GFF3520
GFF3521 - hypothetical protein, at 405,617 to 406,183
GFF3521
GFF3522 - Sensory histidine kinase QseC, at 406,180 to 407,553
GFF3522
GFF3523 - Two-component system response regulator QseB, at 407,550 to 408,212
GFF3523
GFF3524 - hypothetical protein, at 408,282 to 408,665
GFF3524
Position (kb) 406
407
408 Strain fitness (log2 ratio) -1
0
1
2 at 405.309 kb on + strand at 405.342 kb on - strand at 405.941 kb on + strand, within GFF3521 at 407.154 kb on - strand, within GFF3522 at 407.154 kb on - strand, within GFF3522 at 407.238 kb on - strand, within GFF3522 at 407.471 kb on + strand at 407.471 kb on + strand at 407.471 kb on + strand at 407.471 kb on + strand at 407.471 kb on + strand at 407.472 kb on - strand at 407.472 kb on - strand at 407.472 kb on - strand at 407.572 kb on + strand at 407.572 kb on + strand at 407.572 kb on + strand at 407.573 kb on - strand at 407.573 kb on - strand at 407.573 kb on - strand at 407.573 kb on - strand at 407.573 kb on - strand at 407.678 kb on - strand, within GFF3523 at 407.678 kb on - strand, within GFF3523 at 407.749 kb on + strand, within GFF3523 at 407.750 kb on - strand, within GFF3523 at 407.921 kb on - strand, within GFF3523 at 407.921 kb on - strand, within GFF3523 at 408.079 kb on + strand, within GFF3523 at 408.080 kb on - strand, within GFF3523 at 408.201 kb on + strand at 408.201 kb on + strand at 408.202 kb on - strand at 408.220 kb on + strand at 408.220 kb on + strand at 408.220 kb on + strand at 408.220 kb on + strand at 408.221 kb on - strand at 408.221 kb on - strand at 408.221 kb on - strand at 408.221 kb on - strand at 408.251 kb on + strand at 408.251 kb on + strand at 408.252 kb on - strand at 408.252 kb on - strand at 408.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 405,309 + -0.8 405,342 - -0.3 405,941 + GFF3521 0.57 -1.0 407,154 - GFF3522 0.71 -0.9 407,154 - GFF3522 0.71 +1.0 407,238 - GFF3522 0.77 +0.6 407,471 + +0.6 407,471 + +1.0 407,471 + +0.5 407,471 + +0.7 407,471 + +0.3 407,472 - +0.9 407,472 - +0.6 407,472 - -0.6 407,572 + +0.5 407,572 + +2.5 407,572 + +1.1 407,573 - +1.9 407,573 - +1.2 407,573 - +0.9 407,573 - +1.1 407,573 - +0.1 407,678 - GFF3523 0.19 +1.5 407,678 - GFF3523 0.19 -0.2 407,749 + GFF3523 0.30 +0.0 407,750 - GFF3523 0.30 -0.2 407,921 - GFF3523 0.56 +0.4 407,921 - GFF3523 0.56 +0.6 408,079 + GFF3523 0.80 +0.8 408,080 - GFF3523 0.80 +0.7 408,201 + +0.6 408,201 + +1.1 408,202 - +0.9 408,220 + +1.0 408,220 + +0.8 408,220 + +0.0 408,220 + +0.9 408,221 - -0.3 408,221 - +0.1 408,221 - +1.0 408,221 - +1.4 408,251 + +0.7 408,251 + -1.3 408,252 - -0.6 408,252 - -0.1 408,252 - +0.2
Or see this region's nucleotide sequence