Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3512 and GFF3513 are separated by 52 nucleotides GFF3513 and GFF3514 overlap by 11 nucleotides GFF3514 and GFF3515 overlap by 19 nucleotides GFF3515 and GFF3516 are separated by 22 nucleotides
GFF3512 - uncharacterized domain 1, at 398,937 to 399,479
GFF3512
GFF3513 - Transcriptional regulator, MarR family, at 399,532 to 399,996
GFF3513
GFF3514 - Transmembrane transport protein, at 399,986 to 401,227
GFF3514
GFF3515 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 401,209 to 402,000
GFF3515
GFF3516 - Ankyrin, at 402,023 to 402,829
GFF3516
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -1
0
1 at 398.986 kb on + strand at 398.986 kb on + strand at 398.986 kb on + strand at 399.085 kb on + strand, within GFF3512 at 399.085 kb on + strand, within GFF3512 at 399.086 kb on - strand, within GFF3512 at 399.086 kb on - strand, within GFF3512 at 399.086 kb on - strand, within GFF3512 at 399.130 kb on + strand, within GFF3512 at 399.130 kb on + strand, within GFF3512 at 399.131 kb on - strand, within GFF3512 at 399.197 kb on - strand, within GFF3512 at 399.230 kb on - strand, within GFF3512 at 399.230 kb on - strand, within GFF3512 at 399.439 kb on + strand at 399.439 kb on + strand at 399.439 kb on + strand at 399.440 kb on - strand at 399.440 kb on - strand at 399.622 kb on + strand, within GFF3513 at 399.623 kb on - strand, within GFF3513 at 399.623 kb on - strand, within GFF3513 at 399.665 kb on - strand, within GFF3513 at 399.665 kb on - strand, within GFF3513 at 399.665 kb on - strand, within GFF3513 at 400.013 kb on + strand at 400.265 kb on + strand, within GFF3514 at 400.265 kb on + strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.266 kb on - strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.652 kb on + strand, within GFF3514 at 400.653 kb on - strand, within GFF3514 at 400.862 kb on + strand, within GFF3514 at 400.862 kb on + strand, within GFF3514 at 400.862 kb on + strand, within GFF3514 at 400.863 kb on - strand, within GFF3514 at 401.111 kb on + strand at 401.112 kb on - strand at 401.126 kb on + strand at 401.127 kb on - strand at 401.127 kb on - strand at 401.225 kb on + strand at 401.226 kb on - strand at 401.226 kb on - strand at 401.226 kb on - strand at 401.276 kb on + strand at 401.276 kb on + strand at 401.519 kb on + strand, within GFF3515 at 401.519 kb on + strand, within GFF3515 at 401.810 kb on + strand, within GFF3515 at 401.810 kb on + strand, within GFF3515 at 401.810 kb on + strand, within GFF3515 at 401.810 kb on + strand, within GFF3515 at 401.810 kb on + strand, within GFF3515 at 401.810 kb on + strand, within GFF3515 at 401.811 kb on - strand, within GFF3515 at 401.811 kb on - strand, within GFF3515 at 401.811 kb on - strand, within GFF3515 at 401.811 kb on - strand, within GFF3515 at 401.811 kb on - strand, within GFF3515 at 401.811 kb on - strand, within GFF3515 at 401.811 kb on - strand, within GFF3515 at 401.811 kb on - strand, within GFF3515 at 401.811 kb on - strand, within GFF3515 at 401.811 kb on - strand, within GFF3515
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 398,986 + -0.4 398,986 + +0.4 398,986 + -1.2 399,085 + GFF3512 0.27 -0.3 399,085 + GFF3512 0.27 -0.8 399,086 - GFF3512 0.27 +1.7 399,086 - GFF3512 0.27 -0.3 399,086 - GFF3512 0.27 -1.2 399,130 + GFF3512 0.36 +0.8 399,130 + GFF3512 0.36 +1.0 399,131 - GFF3512 0.36 +0.2 399,197 - GFF3512 0.48 +0.3 399,230 - GFF3512 0.54 -0.1 399,230 - GFF3512 0.54 -0.5 399,439 + +0.2 399,439 + -0.2 399,439 + +0.1 399,440 - -0.3 399,440 - -0.5 399,622 + GFF3513 0.19 +0.1 399,623 - GFF3513 0.20 +0.7 399,623 - GFF3513 0.20 +0.2 399,665 - GFF3513 0.29 -0.4 399,665 - GFF3513 0.29 +0.5 399,665 - GFF3513 0.29 +1.0 400,013 + +0.1 400,265 + GFF3514 0.22 -0.0 400,265 + GFF3514 0.22 -0.1 400,266 - GFF3514 0.23 -0.6 400,266 - GFF3514 0.23 +1.0 400,266 - GFF3514 0.23 +0.7 400,266 - GFF3514 0.23 -0.5 400,266 - GFF3514 0.23 -0.1 400,652 + GFF3514 0.54 -0.3 400,652 + GFF3514 0.54 -1.4 400,652 + GFF3514 0.54 +1.3 400,652 + GFF3514 0.54 +0.2 400,652 + GFF3514 0.54 -0.2 400,653 - GFF3514 0.54 -0.0 400,862 + GFF3514 0.71 -0.1 400,862 + GFF3514 0.71 -0.5 400,862 + GFF3514 0.71 +0.0 400,863 - GFF3514 0.71 +1.0 401,111 + -0.5 401,112 - +0.2 401,126 + -0.9 401,127 - -0.1 401,127 - -0.0 401,225 + -0.1 401,226 - -0.3 401,226 - -0.6 401,226 - +0.6 401,276 + +0.0 401,276 + -0.6 401,519 + GFF3515 0.39 -0.2 401,519 + GFF3515 0.39 +0.2 401,810 + GFF3515 0.76 +0.3 401,810 + GFF3515 0.76 -0.2 401,810 + GFF3515 0.76 -0.3 401,810 + GFF3515 0.76 -0.3 401,810 + GFF3515 0.76 +0.0 401,810 + GFF3515 0.76 +0.4 401,811 - GFF3515 0.76 -1.0 401,811 - GFF3515 0.76 -0.8 401,811 - GFF3515 0.76 +0.6 401,811 - GFF3515 0.76 -0.1 401,811 - GFF3515 0.76 -0.1 401,811 - GFF3515 0.76 +0.7 401,811 - GFF3515 0.76 +0.3 401,811 - GFF3515 0.76 +0.8 401,811 - GFF3515 0.76 +0.9 401,811 - GFF3515 0.76 -0.3
Or see this region's nucleotide sequence