Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3433 and GFF3434 overlap by 47 nucleotides GFF3434 and GFF3435 are separated by 30 nucleotides GFF3435 and GFF3436 are separated by 26 nucleotides GFF3436 and GFF3437 overlap by 4 nucleotides
GFF3433 - Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 315,694 to 316,731
GFF3433
GFF3434 - hypothetical protein, at 316,685 to 316,861
GFF3434
GFF3435 - Putative permease often clustered with de novo purine synthesis, at 316,892 to 317,986
GFF3435
GFF3436 - Chromosomal replication initiator protein DnaA, at 318,013 to 318,690
GFF3436
GFF3437 - Phosphoserine phosphatase (EC 3.1.3.3), at 318,687 to 319,355
GFF3437
Position (kb) 316
317
318 Strain fitness (log2 ratio) -2
-1
0
1 at 316.704 kb on - strand at 316.842 kb on - strand, within GFF3434 at 317.015 kb on + strand, within GFF3435 at 317.016 kb on - strand, within GFF3435 at 317.396 kb on + strand, within GFF3435 at 317.399 kb on + strand, within GFF3435 at 317.400 kb on - strand, within GFF3435 at 317.513 kb on + strand, within GFF3435 at 317.513 kb on + strand, within GFF3435 at 317.558 kb on + strand, within GFF3435 at 317.559 kb on - strand, within GFF3435 at 317.559 kb on - strand, within GFF3435 at 317.733 kb on - strand, within GFF3435 at 317.762 kb on + strand, within GFF3435 at 317.762 kb on + strand, within GFF3435 at 317.762 kb on + strand, within GFF3435 at 317.763 kb on - strand, within GFF3435 at 317.763 kb on - strand, within GFF3435 at 317.924 kb on + strand at 317.924 kb on + strand at 317.924 kb on + strand at 317.924 kb on + strand at 317.925 kb on - strand at 317.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 316,704 - -0.5 316,842 - GFF3434 0.89 -0.1 317,015 + GFF3435 0.11 -0.8 317,016 - GFF3435 0.11 +0.3 317,396 + GFF3435 0.46 +0.5 317,399 + GFF3435 0.46 -1.4 317,400 - GFF3435 0.46 +0.0 317,513 + GFF3435 0.57 -0.5 317,513 + GFF3435 0.57 +0.1 317,558 + GFF3435 0.61 -2.0 317,559 - GFF3435 0.61 -0.5 317,559 - GFF3435 0.61 +0.2 317,733 - GFF3435 0.77 -1.2 317,762 + GFF3435 0.79 +0.9 317,762 + GFF3435 0.79 -0.3 317,762 + GFF3435 0.79 -2.1 317,763 - GFF3435 0.80 -0.3 317,763 - GFF3435 0.80 -0.4 317,924 + -0.5 317,924 + -0.1 317,924 + -0.2 317,924 + +0.3 317,925 - +0.3 317,942 + +0.1
Or see this region's nucleotide sequence