Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3400

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
284,161	-		GFF3399	0.34	+0.2
284,331	+		GFF3399	0.50	-0.0
284,332	-		GFF3399	0.50	-0.1
284,478	+		GFF3399	0.64	+0.1
284,601	+		GFF3399	0.76	-0.3
284,830	+				-0.2
284,972	+		GFF3400	0.13	-0.8
284,972	+		GFF3400	0.13	+0.4
284,973	-		GFF3400	0.13	+1.2
285,654	-				-0.1
285,719	+				+0.2
285,823	-				-0.9
285,864	+				+0.2
286,194	+		GFF3401	0.23	+0.3
286,194	+		GFF3401	0.23	-0.2
286,195	-		GFF3401	0.23	+0.5
286,285	-		GFF3401	0.28	-0.5