Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF324 and GFF325 overlap by 4 nucleotides GFF325 and GFF326 are separated by 70 nucleotides GFF326 and GFF327 overlap by 4 nucleotides GFF327 and GFF328 are separated by 162 nucleotides
GFF324 - FIG00537944: hypothetical protein, at 346,208 to 346,810
GFF324
GFF325 - RNA polymerase sigma-70 factor, ECF subfamily, at 346,807 to 347,340
GFF325
GFF326 - putative exported protein, at 347,411 to 347,770
GFF326
GFF327 - Surface antigen gene, at 347,767 to 349,161
GFF327
GFF328 - Transmembrane regulator protein PrtR, at 349,324 to 350,223
GFF328
Position (kb) 347
348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 346.904 kb on - strand, within GFF325 at 346.977 kb on - strand, within GFF325 at 347.289 kb on - strand at 347.310 kb on + strand at 347.390 kb on + strand at 347.391 kb on - strand at 347.658 kb on + strand, within GFF326 at 347.658 kb on + strand, within GFF326 at 347.801 kb on + strand at 347.975 kb on + strand, within GFF327 at 347.975 kb on + strand, within GFF327 at 347.976 kb on - strand, within GFF327 at 348.146 kb on + strand, within GFF327 at 348.147 kb on - strand, within GFF327 at 348.459 kb on + strand, within GFF327 at 348.459 kb on + strand, within GFF327 at 348.460 kb on - strand, within GFF327 at 348.460 kb on - strand, within GFF327 at 348.906 kb on - strand, within GFF327 at 349.131 kb on - strand at 349.430 kb on + strand, within GFF328 at 349.431 kb on - strand, within GFF328 at 349.554 kb on - strand, within GFF328 at 349.554 kb on - strand, within GFF328 at 349.586 kb on + strand, within GFF328 at 349.767 kb on - strand, within GFF328
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 346,904 - GFF325 0.18 -0.6 346,977 - GFF325 0.32 -0.2 347,289 - +0.4 347,310 + -0.2 347,390 + -0.1 347,391 - -0.0 347,658 + GFF326 0.69 +0.2 347,658 + GFF326 0.69 +0.3 347,801 + +0.0 347,975 + GFF327 0.15 -0.6 347,975 + GFF327 0.15 +0.9 347,976 - GFF327 0.15 -0.0 348,146 + GFF327 0.27 -0.2 348,147 - GFF327 0.27 +0.0 348,459 + GFF327 0.50 -0.1 348,459 + GFF327 0.50 -0.1 348,460 - GFF327 0.50 -0.5 348,460 - GFF327 0.50 -0.0 348,906 - GFF327 0.82 -0.8 349,131 - -0.6 349,430 + GFF328 0.12 -1.9 349,431 - GFF328 0.12 +0.2 349,554 - GFF328 0.26 -2.8 349,554 - GFF328 0.26 -0.8 349,586 + GFF328 0.29 -1.7 349,767 - GFF328 0.49 -1.4
Or see this region's nucleotide sequence