Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3261 and GFF5786 are separated by 400 nucleotides GFF5786 and GFF3262 are separated by 43 nucleotides GFF3262 and GFF3263 are separated by 25 nucleotides GFF3263 and GFF3264 overlap by 14 nucleotides
GFF3261 - hypothetical protein, at 143,364 to 144,542
GFF3261
GFF5786 - tRNA-Ser-TGA, at 144,943 to 145,027
GFF5786
GFF3262 - Urease accessory protein UreG, at 145,071 to 145,751
GFF3262
GFF3263 - Urease accessory protein UreF, at 145,777 to 146,496
GFF3263
GFF3264 - Urease accessory protein UreE, at 146,483 to 147,019
GFF3264
Position (kb) 145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.214 kb on + strand, within GFF3261 at 144.214 kb on + strand, within GFF3261 at 144.214 kb on + strand, within GFF3261 at 144.215 kb on - strand, within GFF3261 at 144.215 kb on - strand, within GFF3261 at 144.215 kb on - strand, within GFF3261 at 144.215 kb on - strand, within GFF3261 at 144.241 kb on + strand, within GFF3261 at 144.241 kb on + strand, within GFF3261 at 144.271 kb on + strand, within GFF3261 at 144.271 kb on + strand, within GFF3261 at 144.271 kb on + strand, within GFF3261 at 144.351 kb on + strand, within GFF3261 at 144.352 kb on - strand, within GFF3261 at 144.396 kb on + strand, within GFF3261 at 144.396 kb on + strand, within GFF3261 at 144.397 kb on - strand, within GFF3261 at 144.487 kb on + strand at 144.487 kb on + strand at 144.487 kb on + strand at 144.487 kb on + strand at 144.487 kb on + strand at 144.488 kb on - strand at 144.488 kb on - strand at 144.488 kb on - strand at 144.488 kb on - strand at 144.616 kb on + strand at 144.616 kb on + strand at 144.616 kb on + strand at 144.616 kb on + strand at 144.616 kb on + strand at 144.616 kb on + strand at 144.617 kb on - strand at 144.715 kb on - strand at 144.782 kb on + strand at 144.783 kb on - strand at 144.783 kb on - strand at 144.790 kb on + strand at 144.790 kb on + strand at 144.790 kb on + strand at 144.790 kb on + strand at 144.790 kb on + strand at 144.790 kb on + strand at 144.790 kb on + strand at 144.791 kb on - strand at 144.791 kb on - strand at 144.791 kb on - strand at 144.791 kb on - strand at 144.791 kb on - strand at 144.791 kb on - strand at 144.791 kb on - strand at 144.888 kb on + strand at 144.888 kb on + strand at 144.888 kb on + strand at 144.889 kb on - strand at 144.889 kb on - strand at 144.889 kb on - strand at 144.889 kb on - strand at 145.351 kb on + strand, within GFF3262 at 145.351 kb on + strand, within GFF3262 at 145.352 kb on - strand, within GFF3262 at 145.352 kb on - strand, within GFF3262 at 145.352 kb on - strand, within GFF3262 at 145.588 kb on + strand, within GFF3262 at 145.588 kb on + strand, within GFF3262 at 145.588 kb on + strand, within GFF3262 at 145.589 kb on - strand, within GFF3262 at 145.589 kb on - strand, within GFF3262 at 145.589 kb on - strand, within GFF3262 at 145.589 kb on - strand, within GFF3262 at 145.800 kb on - strand at 146.001 kb on - strand, within GFF3263 at 146.712 kb on + strand, within GFF3264 at 146.712 kb on + strand, within GFF3264 at 146.712 kb on + strand, within GFF3264 at 146.713 kb on - strand, within GFF3264
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 144,214 + GFF3261 0.72 +0.2 144,214 + GFF3261 0.72 +0.3 144,214 + GFF3261 0.72 -0.2 144,215 - GFF3261 0.72 -1.0 144,215 - GFF3261 0.72 -0.4 144,215 - GFF3261 0.72 -0.7 144,215 - GFF3261 0.72 -0.0 144,241 + GFF3261 0.74 -0.5 144,241 + GFF3261 0.74 -0.1 144,271 + GFF3261 0.77 +0.2 144,271 + GFF3261 0.77 +1.3 144,271 + GFF3261 0.77 -1.6 144,351 + GFF3261 0.84 +1.6 144,352 - GFF3261 0.84 -1.0 144,396 + GFF3261 0.88 -0.3 144,396 + GFF3261 0.88 -0.1 144,397 - GFF3261 0.88 +0.4 144,487 + -0.4 144,487 + -2.0 144,487 + -0.0 144,487 + +0.1 144,487 + -0.6 144,488 - +0.0 144,488 - -0.7 144,488 - -0.1 144,488 - -0.9 144,616 + -0.7 144,616 + +0.1 144,616 + +1.7 144,616 + -0.8 144,616 + +0.1 144,616 + -0.1 144,617 - -0.6 144,715 - +0.6 144,782 + -1.0 144,783 - -1.1 144,783 - +0.0 144,790 + +1.3 144,790 + -0.7 144,790 + -1.1 144,790 + -0.3 144,790 + +1.2 144,790 + -0.8 144,790 + -0.5 144,791 - -0.4 144,791 - -0.1 144,791 - +0.6 144,791 - +1.8 144,791 - +0.4 144,791 - -0.3 144,791 - +0.3 144,888 + -0.0 144,888 + +0.4 144,888 + -0.3 144,889 - -0.5 144,889 - -0.2 144,889 - +0.5 144,889 - -0.3 145,351 + GFF3262 0.41 +0.4 145,351 + GFF3262 0.41 -0.0 145,352 - GFF3262 0.41 +0.8 145,352 - GFF3262 0.41 +1.2 145,352 - GFF3262 0.41 +0.9 145,588 + GFF3262 0.76 -0.1 145,588 + GFF3262 0.76 +0.1 145,588 + GFF3262 0.76 +0.3 145,589 - GFF3262 0.76 +0.1 145,589 - GFF3262 0.76 +1.4 145,589 - GFF3262 0.76 +0.4 145,589 - GFF3262 0.76 +0.0 145,800 - +0.6 146,001 - GFF3263 0.31 -1.3 146,712 + GFF3264 0.43 -0.8 146,712 + GFF3264 0.43 +0.6 146,712 + GFF3264 0.43 +0.1 146,713 - GFF3264 0.43 -0.2
Or see this region's nucleotide sequence