Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3155 and GFF3156 overlap by 4 nucleotides
GFF3155 - hypothetical protein, at 31,452 to 32,297
GFF3155
GFF3156 - hypothetical protein, at 32,294 to 32,512
GFF3156
Position (kb) 32
33 Strain fitness (log2 ratio) -2
-1
0
1 at 31.394 kb on - strand at 31.394 kb on - strand at 31.695 kb on + strand, within GFF3155 at 31.695 kb on + strand, within GFF3155 at 31.696 kb on - strand, within GFF3155 at 31.696 kb on - strand, within GFF3155 at 31.705 kb on + strand, within GFF3155 at 31.711 kb on + strand, within GFF3155 at 31.712 kb on + strand, within GFF3155 at 31.712 kb on - strand, within GFF3155 at 31.780 kb on + strand, within GFF3155 at 31.780 kb on + strand, within GFF3155 at 31.780 kb on + strand, within GFF3155 at 31.781 kb on - strand, within GFF3155 at 31.945 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.077 kb on - strand, within GFF3155 at 32.077 kb on - strand, within GFF3155 at 32.116 kb on + strand, within GFF3155 at 32.117 kb on - strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.153 kb on - strand, within GFF3155 at 32.153 kb on - strand, within GFF3155 at 32.186 kb on - strand, within GFF3155 at 33.044 kb on + strand at 33.044 kb on + strand at 33.044 kb on + strand at 33.045 kb on - strand at 33.054 kb on + strand at 33.054 kb on + strand at 33.054 kb on + strand at 33.054 kb on + strand at 33.055 kb on - strand at 33.055 kb on - strand at 33.055 kb on - strand at 33.068 kb on + strand at 33.068 kb on + strand at 33.080 kb on + strand at 33.081 kb on - strand at 33.127 kb on + strand at 33.127 kb on + strand at 33.127 kb on + strand at 33.129 kb on + strand at 33.129 kb on + strand at 33.130 kb on - strand at 33.162 kb on + strand at 33.175 kb on + strand at 33.175 kb on + strand at 33.176 kb on - strand at 33.176 kb on - strand at 33.218 kb on + strand at 33.218 kb on + strand at 33.219 kb on - strand at 33.219 kb on - strand at 33.257 kb on + strand at 33.412 kb on + strand at 33.413 kb on - strand at 33.471 kb on + strand at 33.471 kb on + strand at 33.472 kb on - strand at 33.488 kb on + strand at 33.488 kb on + strand at 33.488 kb on + strand at 33.488 kb on + strand at 33.488 kb on + strand at 33.489 kb on - strand at 33.489 kb on - strand at 33.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 31,394 - -0.1 31,394 - -0.2 31,695 + GFF3155 0.29 -1.6 31,695 + GFF3155 0.29 -0.4 31,696 - GFF3155 0.29 -0.1 31,696 - GFF3155 0.29 -0.0 31,705 + GFF3155 0.30 -0.3 31,711 + GFF3155 0.31 +0.1 31,712 + GFF3155 0.31 -0.5 31,712 - GFF3155 0.31 +0.4 31,780 + GFF3155 0.39 -0.6 31,780 + GFF3155 0.39 +0.4 31,780 + GFF3155 0.39 -1.5 31,781 - GFF3155 0.39 -1.4 31,945 + GFF3155 0.58 -0.1 32,076 + GFF3155 0.74 -0.6 32,076 + GFF3155 0.74 +0.3 32,076 + GFF3155 0.74 -0.7 32,076 + GFF3155 0.74 -1.5 32,077 - GFF3155 0.74 -1.4 32,077 - GFF3155 0.74 +0.2 32,116 + GFF3155 0.78 -0.1 32,117 - GFF3155 0.79 +0.3 32,152 + GFF3155 0.83 +0.3 32,152 + GFF3155 0.83 +0.3 32,152 + GFF3155 0.83 -1.6 32,152 + GFF3155 0.83 -0.2 32,153 - GFF3155 0.83 -1.1 32,153 - GFF3155 0.83 +0.1 32,186 - GFF3155 0.87 +0.4 33,044 + +1.4 33,044 + -0.3 33,044 + -0.1 33,045 - -1.9 33,054 + -0.0 33,054 + +0.0 33,054 + -0.6 33,054 + +0.5 33,055 - -0.3 33,055 - +0.9 33,055 - -0.1 33,068 + -0.9 33,068 + -0.0 33,080 + -0.5 33,081 - +0.3 33,127 + +0.7 33,127 + -0.4 33,127 + +0.9 33,129 + -0.3 33,129 + -0.3 33,130 - +1.1 33,162 + -0.1 33,175 + -0.1 33,175 + +0.3 33,176 - +0.5 33,176 - -0.6 33,218 + -0.5 33,218 + -0.3 33,219 - -1.0 33,219 - +0.4 33,257 + -0.9 33,412 + -1.9 33,413 - +0.9 33,471 + +0.2 33,471 + -0.6 33,472 - -0.8 33,488 + -0.1 33,488 + -0.9 33,488 + +1.7 33,488 + +0.2 33,488 + -0.0 33,489 - -0.0 33,489 - -0.2 33,489 - -0.2
Or see this region's nucleotide sequence