Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3083

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
159,924	+		GFF3082	0.17	-0.1
159,924	+		GFF3082	0.17	-0.1
159,924	+		GFF3082	0.17	+1.0
159,925	-		GFF3082	0.18	+0.1
159,925	-		GFF3082	0.18	+0.0
159,925	-		GFF3082	0.18	-0.4
159,925	-		GFF3082	0.18	+0.0
159,925	-		GFF3082	0.18	-0.1
159,925	-		GFF3082	0.18	-0.3
159,925	-		GFF3082	0.18	-0.3
159,925	-		GFF3082	0.18	-0.2
159,925	-		GFF3082	0.18	+0.5
160,017	+		GFF3082	0.27	-2.4
160,101	+		GFF3082	0.35	-0.0
160,699	+				-0.6
160,699	+				-0.0
160,700	-				+0.3
160,700	-				-0.6
160,761	+				+0.2
160,761	+				-0.7
160,761	+				-1.1
160,761	+				+1.5
160,762	-				-0.7
160,762	-				-0.6
161,463	+		GFF3083	0.72	+0.4
161,463	+		GFF3083	0.72	+0.3
161,463	+		GFF3083	0.72	+0.7
162,111	+		GFF3084	0.32	-1.8
162,111	+		GFF3084	0.32	-2.1
162,111	+		GFF3084	0.32	+1.4
162,112	-		GFF3084	0.32	-0.8
162,112	-		GFF3084	0.32	+0.2
162,112	-		GFF3084	0.32	+0.3
162,112	-		GFF3084	0.32	+0.5
162,112	-		GFF3084	0.32	-1.0
162,198	+		GFF3084	0.39	+0.1
162,198	+		GFF3084	0.39	+0.3
162,198	+		GFF3084	0.39	-0.3
162,199	-		GFF3084	0.40	+1.0
162,199	-		GFF3084	0.40	-0.7
162,199	-		GFF3084	0.40	+0.1
162,199	-		GFF3084	0.40	+0.7
162,199	-		GFF3084	0.40	+0.9
162,199	-		GFF3084	0.40	-0.5
162,199	-		GFF3084	0.40	-1.5
162,199	-		GFF3084	0.40	+0.7
162,447	+		GFF3084	0.61	-0.7
162,447	+		GFF3084	0.61	-1.7
162,448	-		GFF3084	0.61	+0.1
162,448	-		GFF3084	0.61	-1.4