Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2904 and GFF2905 are separated by 47 nucleotides
GFF2904 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 492,664 to 493,911
GFF2904
GFF2905 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 493,959 to 494,768
GFF2905
Position (kb) 493
494
495 Strain fitness (log2 ratio) -2
-1
0
1
2 at 493.056 kb on - strand, within GFF2904 at 493.188 kb on - strand, within GFF2904 at 493.217 kb on + strand, within GFF2904 at 493.217 kb on + strand, within GFF2904 at 493.217 kb on + strand, within GFF2904 at 493.217 kb on + strand, within GFF2904 at 493.218 kb on - strand, within GFF2904 at 493.218 kb on - strand, within GFF2904 at 493.218 kb on - strand, within GFF2904 at 493.218 kb on - strand, within GFF2904 at 493.226 kb on + strand, within GFF2904 at 493.226 kb on + strand, within GFF2904 at 493.227 kb on - strand, within GFF2904 at 493.227 kb on - strand, within GFF2904 at 493.227 kb on - strand, within GFF2904 at 493.227 kb on - strand, within GFF2904 at 493.376 kb on + strand, within GFF2904 at 493.377 kb on - strand, within GFF2904 at 493.377 kb on - strand, within GFF2904 at 493.377 kb on - strand, within GFF2904 at 493.377 kb on - strand, within GFF2904 at 493.506 kb on - strand, within GFF2904 at 493.506 kb on - strand, within GFF2904 at 493.506 kb on - strand, within GFF2904 at 493.506 kb on - strand, within GFF2904 at 493.578 kb on - strand, within GFF2904 at 493.604 kb on + strand, within GFF2904 at 493.604 kb on + strand, within GFF2904 at 493.604 kb on + strand, within GFF2904 at 493.605 kb on - strand, within GFF2904 at 493.605 kb on - strand, within GFF2904 at 493.605 kb on - strand, within GFF2904 at 493.625 kb on + strand, within GFF2904 at 493.625 kb on + strand, within GFF2904 at 493.987 kb on + strand at 493.987 kb on + strand at 493.987 kb on + strand at 493.987 kb on + strand at 493.988 kb on - strand at 494.039 kb on - strand at 494.039 kb on - strand at 494.039 kb on - strand at 494.039 kb on - strand at 494.116 kb on + strand, within GFF2905 at 494.116 kb on + strand, within GFF2905 at 494.117 kb on - strand, within GFF2905 at 494.117 kb on - strand, within GFF2905 at 494.332 kb on + strand, within GFF2905 at 494.332 kb on + strand, within GFF2905 at 494.332 kb on + strand, within GFF2905 at 494.333 kb on - strand, within GFF2905 at 494.333 kb on - strand, within GFF2905 at 494.374 kb on + strand, within GFF2905 at 494.374 kb on + strand, within GFF2905 at 494.375 kb on - strand, within GFF2905 at 494.375 kb on - strand, within GFF2905 at 494.381 kb on - strand, within GFF2905 at 494.381 kb on - strand, within GFF2905
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 493,056 - GFF2904 0.31 +0.3 493,188 - GFF2904 0.42 +0.1 493,217 + GFF2904 0.44 +0.6 493,217 + GFF2904 0.44 +0.2 493,217 + GFF2904 0.44 +0.3 493,217 + GFF2904 0.44 -0.0 493,218 - GFF2904 0.44 -1.9 493,218 - GFF2904 0.44 +0.6 493,218 - GFF2904 0.44 +0.8 493,218 - GFF2904 0.44 +0.4 493,226 + GFF2904 0.45 -0.1 493,226 + GFF2904 0.45 +2.2 493,227 - GFF2904 0.45 +0.0 493,227 - GFF2904 0.45 -0.1 493,227 - GFF2904 0.45 +0.0 493,227 - GFF2904 0.45 -0.7 493,376 + GFF2904 0.57 +0.2 493,377 - GFF2904 0.57 -0.5 493,377 - GFF2904 0.57 -0.6 493,377 - GFF2904 0.57 +0.5 493,377 - GFF2904 0.57 -1.3 493,506 - GFF2904 0.67 -1.1 493,506 - GFF2904 0.67 -0.1 493,506 - GFF2904 0.67 -0.5 493,506 - GFF2904 0.67 -0.1 493,578 - GFF2904 0.73 +0.6 493,604 + GFF2904 0.75 +0.0 493,604 + GFF2904 0.75 +0.1 493,604 + GFF2904 0.75 +2.6 493,605 - GFF2904 0.75 +0.2 493,605 - GFF2904 0.75 +1.5 493,605 - GFF2904 0.75 -0.0 493,625 + GFF2904 0.77 +0.1 493,625 + GFF2904 0.77 -0.6 493,987 + -1.5 493,987 + -0.9 493,987 + +1.6 493,987 + -0.0 493,988 - -0.2 494,039 - -1.3 494,039 - +0.6 494,039 - +0.5 494,039 - -1.7 494,116 + GFF2905 0.19 +0.5 494,116 + GFF2905 0.19 -0.4 494,117 - GFF2905 0.20 +0.6 494,117 - GFF2905 0.20 +1.1 494,332 + GFF2905 0.46 +0.7 494,332 + GFF2905 0.46 +0.7 494,332 + GFF2905 0.46 +0.3 494,333 - GFF2905 0.46 +0.2 494,333 - GFF2905 0.46 -0.0 494,374 + GFF2905 0.51 +1.0 494,374 + GFF2905 0.51 -0.3 494,375 - GFF2905 0.51 -0.3 494,375 - GFF2905 0.51 +2.1 494,381 - GFF2905 0.52 +1.4 494,381 - GFF2905 0.52 +0.2
Or see this region's nucleotide sequence