Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2891 and GFF2892 are separated by 19 nucleotides GFF2892 and GFF2893 are separated by 102 nucleotides GFF2893 and GFF2894 are separated by 7 nucleotides GFF2894 and GFF2895 overlap by 4 nucleotides
GFF2891 - conserved hypothetical secreted protein, at 481,375 to 481,623
GFF2891
GFF2892 - FIG00349859: hypothetical protein, at 481,643 to 482,248
GFF2892
GFF2893 - hypothetical protein, at 482,351 to 482,575
GFF2893
GFF2894 - Putative translation initiation inhibitor, yjgF family, at 482,583 to 482,978
GFF2894
GFF2895 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 482,975 to 484,642
GFF2895
Position (kb) 482
483 Strain fitness (log2 ratio) -2
-1
0
1 at 482.142 kb on + strand, within GFF2892 at 482.143 kb on - strand, within GFF2892 at 482.285 kb on + strand at 482.285 kb on + strand at 482.285 kb on + strand at 482.285 kb on + strand at 482.285 kb on + strand at 482.286 kb on - strand at 482.286 kb on - strand at 482.286 kb on - strand at 482.729 kb on - strand, within GFF2894 at 482.729 kb on - strand, within GFF2894 at 482.749 kb on + strand, within GFF2894 at 482.749 kb on + strand, within GFF2894 at 482.750 kb on - strand, within GFF2894 at 482.750 kb on - strand, within GFF2894 at 482.750 kb on - strand, within GFF2894 at 483.091 kb on - strand at 483.174 kb on + strand, within GFF2895 at 483.174 kb on + strand, within GFF2895 at 483.174 kb on + strand, within GFF2895 at 483.175 kb on - strand, within GFF2895 at 483.175 kb on - strand, within GFF2895 at 483.286 kb on - strand, within GFF2895 at 483.325 kb on - strand, within GFF2895 at 483.333 kb on + strand, within GFF2895 at 483.334 kb on - strand, within GFF2895 at 483.390 kb on + strand, within GFF2895 at 483.390 kb on + strand, within GFF2895 at 483.391 kb on - strand, within GFF2895 at 483.391 kb on - strand, within GFF2895 at 483.418 kb on - strand, within GFF2895 at 483.730 kb on - strand, within GFF2895 at 483.730 kb on - strand, within GFF2895 at 483.747 kb on + strand, within GFF2895 at 483.802 kb on - strand, within GFF2895 at 483.819 kb on + strand, within GFF2895 at 483.819 kb on + strand, within GFF2895 at 483.819 kb on + strand, within GFF2895 at 483.820 kb on - strand, within GFF2895 at 483.820 kb on - strand, within GFF2895 at 483.820 kb on - strand, within GFF2895
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 482,142 + GFF2892 0.82 +0.7 482,143 - GFF2892 0.83 +0.2 482,285 + -0.3 482,285 + -1.3 482,285 + -0.4 482,285 + -0.9 482,285 + +0.5 482,286 - -0.2 482,286 - -0.8 482,286 - -0.3 482,729 - GFF2894 0.37 -0.5 482,729 - GFF2894 0.37 -1.5 482,749 + GFF2894 0.42 -2.2 482,749 + GFF2894 0.42 -0.9 482,750 - GFF2894 0.42 -1.9 482,750 - GFF2894 0.42 -2.1 482,750 - GFF2894 0.42 -2.0 483,091 - +0.1 483,174 + GFF2895 0.12 +0.5 483,174 + GFF2895 0.12 -0.1 483,174 + GFF2895 0.12 -0.1 483,175 - GFF2895 0.12 +0.4 483,175 - GFF2895 0.12 -0.4 483,286 - GFF2895 0.19 -0.9 483,325 - GFF2895 0.21 -1.1 483,333 + GFF2895 0.21 -0.1 483,334 - GFF2895 0.22 +1.5 483,390 + GFF2895 0.25 +0.4 483,390 + GFF2895 0.25 -0.0 483,391 - GFF2895 0.25 +0.2 483,391 - GFF2895 0.25 -0.2 483,418 - GFF2895 0.27 +0.1 483,730 - GFF2895 0.45 +0.8 483,730 - GFF2895 0.45 +1.5 483,747 + GFF2895 0.46 +0.9 483,802 - GFF2895 0.50 +0.0 483,819 + GFF2895 0.51 -0.1 483,819 + GFF2895 0.51 +0.3 483,819 + GFF2895 0.51 +0.3 483,820 - GFF2895 0.51 +0.4 483,820 - GFF2895 0.51 +0.1 483,820 - GFF2895 0.51 +0.6
Or see this region's nucleotide sequence