Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2783 and GFF2784 overlap by 4 nucleotides GFF2784 and GFF2785 are separated by 75 nucleotides GFF2785 and GFF2786 are separated by 111 nucleotides
GFF2783 - Sensor histidine kinase, at 382,352 to 383,704
GFF2783
GFF2784 - Sensor histidine kinase, at 383,701 to 385,041
GFF2784
GFF2785 - Response regulator receiver, at 385,117 to 385,569
GFF2785
GFF2786 - putative lipoprotein, at 385,681 to 385,992
GFF2786
Position (kb) 383
384
385
386 Strain fitness (log2 ratio) -2
-1
0
1 at 383.455 kb on - strand, within GFF2783 at 383.601 kb on + strand at 383.601 kb on + strand at 383.602 kb on - strand at 383.602 kb on - strand at 383.602 kb on - strand at 383.715 kb on + strand at 383.716 kb on - strand at 383.716 kb on - strand at 383.716 kb on - strand at 384.494 kb on + strand, within GFF2784 at 384.494 kb on + strand, within GFF2784 at 384.495 kb on - strand, within GFF2784 at 384.495 kb on - strand, within GFF2784 at 384.557 kb on + strand, within GFF2784 at 384.557 kb on + strand, within GFF2784 at 384.557 kb on + strand, within GFF2784 at 384.558 kb on - strand, within GFF2784 at 384.698 kb on + strand, within GFF2784 at 384.698 kb on + strand, within GFF2784 at 384.699 kb on - strand, within GFF2784 at 384.699 kb on - strand, within GFF2784 at 384.699 kb on - strand, within GFF2784 at 384.705 kb on + strand, within GFF2784 at 384.706 kb on - strand, within GFF2784 at 384.706 kb on - strand, within GFF2784 at 384.776 kb on + strand, within GFF2784 at 384.846 kb on - strand, within GFF2784 at 384.992 kb on + strand at 384.992 kb on + strand at 384.992 kb on + strand at 384.992 kb on + strand at 385.118 kb on + strand at 385.118 kb on + strand at 385.118 kb on + strand at 385.119 kb on - strand at 385.259 kb on + strand, within GFF2785 at 385.259 kb on + strand, within GFF2785 at 385.259 kb on + strand, within GFF2785 at 385.472 kb on + strand, within GFF2785 at 385.473 kb on - strand, within GFF2785 at 385.473 kb on - strand, within GFF2785 at 385.499 kb on + strand, within GFF2785 at 385.499 kb on + strand, within GFF2785 at 385.499 kb on + strand, within GFF2785 at 385.500 kb on - strand, within GFF2785 at 385.563 kb on + strand at 385.563 kb on + strand at 385.563 kb on + strand at 385.563 kb on + strand at 385.563 kb on + strand at 385.564 kb on - strand at 385.564 kb on - strand at 385.564 kb on - strand at 385.564 kb on - strand at 385.564 kb on - strand at 385.569 kb on + strand at 385.570 kb on - strand at 385.570 kb on - strand at 385.570 kb on - strand at 385.646 kb on - strand at 385.657 kb on + strand at 385.658 kb on - strand at 385.658 kb on - strand at 385.850 kb on + strand, within GFF2786 at 385.892 kb on + strand, within GFF2786 at 385.892 kb on + strand, within GFF2786 at 385.893 kb on - strand, within GFF2786 at 385.893 kb on - strand, within GFF2786
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 383,455 - GFF2783 0.82 +0.6 383,601 + +0.3 383,601 + -0.7 383,602 - -0.8 383,602 - +0.5 383,602 - +0.2 383,715 + -0.5 383,716 - -0.2 383,716 - -0.0 383,716 - -1.3 384,494 + GFF2784 0.59 -0.5 384,494 + GFF2784 0.59 -1.4 384,495 - GFF2784 0.59 -1.6 384,495 - GFF2784 0.59 -0.4 384,557 + GFF2784 0.64 -1.4 384,557 + GFF2784 0.64 -2.4 384,557 + GFF2784 0.64 -0.1 384,558 - GFF2784 0.64 -0.2 384,698 + GFF2784 0.74 +0.3 384,698 + GFF2784 0.74 +0.2 384,699 - GFF2784 0.74 -0.2 384,699 - GFF2784 0.74 -0.5 384,699 - GFF2784 0.74 -0.6 384,705 + GFF2784 0.75 -0.1 384,706 - GFF2784 0.75 -0.3 384,706 - GFF2784 0.75 -0.3 384,776 + GFF2784 0.80 -0.3 384,846 - GFF2784 0.85 -1.6 384,992 + +0.2 384,992 + +1.1 384,992 + +0.2 384,992 + -0.6 385,118 + -0.5 385,118 + -0.5 385,118 + -0.9 385,119 - +0.6 385,259 + GFF2785 0.31 -0.9 385,259 + GFF2785 0.31 -0.8 385,259 + GFF2785 0.31 -1.0 385,472 + GFF2785 0.78 -0.7 385,473 - GFF2785 0.79 -1.8 385,473 - GFF2785 0.79 -0.9 385,499 + GFF2785 0.84 -0.4 385,499 + GFF2785 0.84 -2.0 385,499 + GFF2785 0.84 -1.3 385,500 - GFF2785 0.85 -1.9 385,563 + -0.1 385,563 + +0.0 385,563 + -1.5 385,563 + -2.3 385,563 + -0.8 385,564 - +0.9 385,564 - -0.8 385,564 - +0.5 385,564 - -1.4 385,564 - +1.4 385,569 + +0.3 385,570 - -1.5 385,570 - +1.5 385,570 - +0.5 385,646 - +0.1 385,657 + -0.1 385,658 - +0.3 385,658 - -0.6 385,850 + GFF2786 0.54 -0.2 385,892 + GFF2786 0.68 -0.3 385,892 + GFF2786 0.68 -0.2 385,893 - GFF2786 0.68 +0.3 385,893 - GFF2786 0.68 -0.5
Or see this region's nucleotide sequence