Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2755 and GFF2756 are separated by 4 nucleotides GFF2756 and GFF2757 are separated by 7 nucleotides GFF2757 and GFF2758 are separated by 150 nucleotides
GFF2755 - Excinuclease ABC subunit A, at 351,663 to 354,785
GFF2755
GFF2756 - Outer membrane protein V, at 354,790 to 355,620
GFF2756
GFF2757 - hypothetical protein, at 355,628 to 356,185
GFF2757
GFF2758 - Adenylate cyclase (EC 4.6.1.1), at 356,336 to 357,889
GFF2758
Position (kb) 354
355
356 Strain fitness (log2 ratio) -1
0
1
2 at 353.922 kb on + strand, within GFF2755 at 353.922 kb on + strand, within GFF2755 at 353.946 kb on + strand, within GFF2755 at 354.066 kb on + strand, within GFF2755 at 354.066 kb on + strand, within GFF2755 at 354.066 kb on + strand, within GFF2755 at 354.234 kb on + strand, within GFF2755 at 354.234 kb on + strand, within GFF2755 at 354.234 kb on + strand, within GFF2755 at 354.235 kb on - strand, within GFF2755 at 354.235 kb on - strand, within GFF2755 at 354.235 kb on - strand, within GFF2755 at 354.294 kb on + strand, within GFF2755 at 354.294 kb on + strand, within GFF2755 at 354.414 kb on + strand, within GFF2755 at 354.414 kb on + strand, within GFF2755 at 354.414 kb on + strand, within GFF2755 at 354.415 kb on - strand, within GFF2755 at 354.419 kb on - strand, within GFF2755 at 354.516 kb on + strand at 354.516 kb on + strand at 354.516 kb on + strand at 354.516 kb on + strand at 354.517 kb on - strand at 354.517 kb on - strand at 354.517 kb on - strand at 354.517 kb on - strand at 354.784 kb on - strand at 354.792 kb on - strand at 354.792 kb on - strand at 354.803 kb on + strand at 354.899 kb on + strand, within GFF2756 at 354.900 kb on - strand, within GFF2756 at 355.023 kb on - strand, within GFF2756 at 355.037 kb on + strand, within GFF2756 at 355.037 kb on + strand, within GFF2756 at 355.106 kb on + strand, within GFF2756 at 355.106 kb on + strand, within GFF2756 at 355.107 kb on - strand, within GFF2756 at 355.175 kb on + strand, within GFF2756 at 355.175 kb on + strand, within GFF2756 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.714 kb on - strand, within GFF2757 at 355.714 kb on - strand, within GFF2757 at 355.720 kb on - strand, within GFF2757 at 355.773 kb on + strand, within GFF2757 at 355.774 kb on - strand, within GFF2757 at 355.774 kb on - strand, within GFF2757 at 355.896 kb on + strand, within GFF2757 at 355.896 kb on + strand, within GFF2757 at 355.897 kb on - strand, within GFF2757 at 355.897 kb on - strand, within GFF2757 at 355.897 kb on - strand, within GFF2757 at 355.897 kb on - strand, within GFF2757 at 355.899 kb on + strand, within GFF2757 at 355.899 kb on + strand, within GFF2757 at 355.935 kb on + strand, within GFF2757 at 356.247 kb on + strand at 356.256 kb on + strand at 356.257 kb on - strand at 356.257 kb on - strand at 356.257 kb on - strand at 356.257 kb on - strand at 356.257 kb on - strand at 356.272 kb on + strand at 356.450 kb on + strand at 356.451 kb on - strand at 356.451 kb on - strand at 356.451 kb on - strand at 356.451 kb on - strand at 356.451 kb on - strand at 356.451 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 353,922 + GFF2755 0.72 +0.0 353,922 + GFF2755 0.72 +0.3 353,946 + GFF2755 0.73 -0.1 354,066 + GFF2755 0.77 -0.4 354,066 + GFF2755 0.77 +0.4 354,066 + GFF2755 0.77 -0.4 354,234 + GFF2755 0.82 -0.5 354,234 + GFF2755 0.82 -1.5 354,234 + GFF2755 0.82 -1.5 354,235 - GFF2755 0.82 +0.0 354,235 - GFF2755 0.82 -0.7 354,235 - GFF2755 0.82 -0.7 354,294 + GFF2755 0.84 -0.1 354,294 + GFF2755 0.84 -0.4 354,414 + GFF2755 0.88 -0.2 354,414 + GFF2755 0.88 -0.0 354,414 + GFF2755 0.88 -0.6 354,415 - GFF2755 0.88 +1.5 354,419 - GFF2755 0.88 -0.2 354,516 + +1.2 354,516 + -0.8 354,516 + -1.2 354,516 + -1.0 354,517 - -1.3 354,517 - +0.0 354,517 - +0.5 354,517 - -0.2 354,784 - +0.1 354,792 - -1.0 354,792 - -0.3 354,803 + -0.1 354,899 + GFF2756 0.13 +0.2 354,900 - GFF2756 0.13 +1.7 355,023 - GFF2756 0.28 +0.0 355,037 + GFF2756 0.30 +1.1 355,037 + GFF2756 0.30 +1.0 355,106 + GFF2756 0.38 +0.0 355,106 + GFF2756 0.38 -0.2 355,107 - GFF2756 0.38 +0.1 355,175 + GFF2756 0.46 -0.0 355,175 + GFF2756 0.46 +0.3 355,713 + GFF2757 0.15 +0.2 355,713 + GFF2757 0.15 -0.3 355,713 + GFF2757 0.15 -0.9 355,713 + GFF2757 0.15 +0.5 355,713 + GFF2757 0.15 -0.2 355,713 + GFF2757 0.15 +1.8 355,714 - GFF2757 0.15 -0.5 355,714 - GFF2757 0.15 -0.1 355,720 - GFF2757 0.16 +0.0 355,773 + GFF2757 0.26 -0.9 355,774 - GFF2757 0.26 -1.0 355,774 - GFF2757 0.26 -0.4 355,896 + GFF2757 0.48 +0.3 355,896 + GFF2757 0.48 -0.9 355,897 - GFF2757 0.48 -1.3 355,897 - GFF2757 0.48 +0.5 355,897 - GFF2757 0.48 -0.2 355,897 - GFF2757 0.48 +0.5 355,899 + GFF2757 0.49 +0.8 355,899 + GFF2757 0.49 +0.1 355,935 + GFF2757 0.55 +0.4 356,247 + -1.0 356,256 + +0.0 356,257 - -0.4 356,257 - -0.4 356,257 - -0.6 356,257 - -0.5 356,257 - +0.8 356,272 + +0.6 356,450 + -0.2 356,451 - -0.1 356,451 - -1.3 356,451 - -0.1 356,451 - -0.5 356,451 - +0.2 356,451 - +0.1
Or see this region's nucleotide sequence