Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2742 and GFF2743 are separated by 50 nucleotides GFF2743 and GFF2744 are separated by 229 nucleotides
GFF2742 - VgrG protein, at 338,179 to 339,306
GFF2742
GFF2743 - Transcriptional regulator, IclR family, at 339,357 to 340,238
GFF2743
GFF2744 - Fumarylacetoacetate hydrolase family protein, at 340,468 to 341,478
GFF2744
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.441 kb on + strand, within GFF2742 at 338.441 kb on + strand, within GFF2742 at 338.441 kb on - strand, within GFF2742 at 338.442 kb on - strand, within GFF2742 at 338.703 kb on - strand, within GFF2742 at 338.747 kb on + strand, within GFF2742 at 338.748 kb on - strand, within GFF2742 at 338.780 kb on + strand, within GFF2742 at 338.780 kb on + strand, within GFF2742 at 338.781 kb on - strand, within GFF2742 at 339.382 kb on + strand at 339.988 kb on + strand, within GFF2743 at 340.146 kb on + strand, within GFF2743 at 340.146 kb on + strand, within GFF2743 at 340.147 kb on - strand, within GFF2743 at 340.147 kb on - strand, within GFF2743 at 340.440 kb on + strand at 340.441 kb on - strand at 340.463 kb on + strand at 340.463 kb on + strand at 340.464 kb on - strand at 340.464 kb on - strand at 340.464 kb on - strand at 340.464 kb on - strand at 340.464 kb on - strand at 340.483 kb on + strand at 340.483 kb on + strand at 340.483 kb on + strand at 340.484 kb on - strand at 340.484 kb on - strand at 340.484 kb on - strand at 340.484 kb on - strand at 340.484 kb on - strand at 340.517 kb on + strand at 340.517 kb on + strand at 340.517 kb on + strand at 340.518 kb on - strand at 340.518 kb on - strand at 340.518 kb on - strand at 340.518 kb on - strand at 340.546 kb on + strand at 340.547 kb on - strand at 340.547 kb on - strand at 340.624 kb on + strand, within GFF2744 at 340.624 kb on + strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.706 kb on - strand, within GFF2744 at 340.706 kb on - strand, within GFF2744 at 340.729 kb on + strand, within GFF2744 at 340.730 kb on - strand, within GFF2744 at 340.730 kb on - strand, within GFF2744 at 340.789 kb on + strand, within GFF2744 at 340.790 kb on - strand, within GFF2744 at 340.790 kb on - strand, within GFF2744 at 340.807 kb on + strand, within GFF2744 at 340.807 kb on + strand, within GFF2744 at 340.808 kb on - strand, within GFF2744 at 340.808 kb on - strand, within GFF2744 at 340.808 kb on - strand, within GFF2744 at 340.850 kb on - strand, within GFF2744
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 338,441 + GFF2742 0.23 +0.4 338,441 + GFF2742 0.23 +0.3 338,441 - GFF2742 0.23 +0.1 338,442 - GFF2742 0.23 -1.4 338,703 - GFF2742 0.46 -0.0 338,747 + GFF2742 0.50 -0.7 338,748 - GFF2742 0.50 -0.0 338,780 + GFF2742 0.53 -2.5 338,780 + GFF2742 0.53 -0.8 338,781 - GFF2742 0.53 -0.2 339,382 + -1.4 339,988 + GFF2743 0.72 +1.5 340,146 + GFF2743 0.89 +0.1 340,146 + GFF2743 0.89 -2.7 340,147 - GFF2743 0.90 -0.6 340,147 - GFF2743 0.90 -0.6 340,440 + -0.2 340,441 - -0.1 340,463 + -0.1 340,463 + -0.2 340,464 - +0.3 340,464 - -0.5 340,464 - +0.0 340,464 - -0.9 340,464 - +1.5 340,483 + -0.2 340,483 + +0.1 340,483 + +0.2 340,484 - +0.7 340,484 - -1.3 340,484 - +0.1 340,484 - -0.1 340,484 - +0.0 340,517 + +0.0 340,517 + -0.3 340,517 + +0.1 340,518 - -0.0 340,518 - -1.1 340,518 - +0.7 340,518 - -0.7 340,546 + +0.1 340,547 - -0.5 340,547 - +0.5 340,624 + GFF2744 0.15 -0.3 340,624 + GFF2744 0.15 -0.4 340,625 - GFF2744 0.16 +0.2 340,625 - GFF2744 0.16 -0.3 340,625 - GFF2744 0.16 -0.6 340,625 - GFF2744 0.16 +0.1 340,625 - GFF2744 0.16 -0.3 340,625 - GFF2744 0.16 +0.0 340,625 - GFF2744 0.16 +0.1 340,625 - GFF2744 0.16 -0.4 340,706 - GFF2744 0.24 -0.1 340,706 - GFF2744 0.24 +0.6 340,729 + GFF2744 0.26 -0.3 340,730 - GFF2744 0.26 +0.4 340,730 - GFF2744 0.26 -1.6 340,789 + GFF2744 0.32 -1.1 340,790 - GFF2744 0.32 +0.5 340,790 - GFF2744 0.32 +0.0 340,807 + GFF2744 0.34 -0.5 340,807 + GFF2744 0.34 -0.3 340,808 - GFF2744 0.34 -0.2 340,808 - GFF2744 0.34 +1.8 340,808 - GFF2744 0.34 -0.3 340,850 - GFF2744 0.38 -2.2
Or see this region's nucleotide sequence