Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2735 and GFF2736 are separated by 6 nucleotides GFF2736 and GFF2737 overlap by 4 nucleotides GFF2737 and GFF2738 are separated by 126 nucleotides
GFF2735 - Small heat shock protein, at 332,160 to 332,552
GFF2735
GFF2736 - Glycine cleavage system transcriptional activator, at 332,559 to 333,428
GFF2736
GFF2737 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 333,425 to 334,273
GFF2737
GFF2738 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 334,400 to 335,740
GFF2738
Position (kb) 333
334
335 Strain fitness (log2 ratio) -1
0
1 at 332.479 kb on - strand, within GFF2735 at 332.479 kb on - strand, within GFF2735 at 332.479 kb on - strand, within GFF2735 at 332.638 kb on + strand at 332.638 kb on + strand at 332.638 kb on + strand at 332.638 kb on + strand at 332.638 kb on + strand at 332.638 kb on + strand at 332.639 kb on - strand at 332.639 kb on - strand at 332.639 kb on - strand at 332.920 kb on + strand, within GFF2736 at 332.920 kb on + strand, within GFF2736 at 332.920 kb on + strand, within GFF2736 at 332.921 kb on - strand, within GFF2736 at 333.229 kb on + strand, within GFF2736 at 333.229 kb on + strand, within GFF2736 at 333.230 kb on - strand, within GFF2736 at 333.663 kb on + strand, within GFF2737 at 333.663 kb on + strand, within GFF2737 at 333.664 kb on - strand, within GFF2737 at 333.664 kb on - strand, within GFF2737 at 333.664 kb on - strand, within GFF2737 at 333.766 kb on - strand, within GFF2737 at 333.766 kb on - strand, within GFF2737 at 333.879 kb on + strand, within GFF2737 at 333.879 kb on + strand, within GFF2737 at 334.161 kb on + strand, within GFF2737 at 334.161 kb on + strand, within GFF2737 at 334.252 kb on + strand at 334.261 kb on - strand at 334.261 kb on - strand at 334.406 kb on + strand at 334.406 kb on + strand at 334.406 kb on + strand at 334.407 kb on - strand at 334.407 kb on - strand at 334.502 kb on + strand at 334.503 kb on - strand at 334.503 kb on - strand at 334.503 kb on - strand at 334.503 kb on - strand at 334.503 kb on - strand at 334.540 kb on + strand, within GFF2738 at 334.625 kb on + strand, within GFF2738 at 334.626 kb on - strand, within GFF2738 at 334.772 kb on + strand, within GFF2738 at 334.773 kb on - strand, within GFF2738 at 334.805 kb on - strand, within GFF2738 at 334.889 kb on + strand, within GFF2738 at 334.955 kb on + strand, within GFF2738 at 334.955 kb on + strand, within GFF2738 at 334.956 kb on - strand, within GFF2738 at 334.956 kb on - strand, within GFF2738 at 334.956 kb on - strand, within GFF2738 at 335.087 kb on + strand, within GFF2738 at 335.087 kb on + strand, within GFF2738 at 335.088 kb on - strand, within GFF2738 at 335.105 kb on + strand, within GFF2738 at 335.210 kb on + strand, within GFF2738 at 335.210 kb on + strand, within GFF2738 at 335.211 kb on - strand, within GFF2738
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 332,479 - GFF2735 0.81 -0.6 332,479 - GFF2735 0.81 -0.2 332,479 - GFF2735 0.81 +0.4 332,638 + +0.1 332,638 + +0.7 332,638 + +0.2 332,638 + -0.2 332,638 + +1.1 332,638 + +0.6 332,639 - +0.6 332,639 - +0.0 332,639 - -0.2 332,920 + GFF2736 0.41 +0.5 332,920 + GFF2736 0.41 -0.2 332,920 + GFF2736 0.41 -0.0 332,921 - GFF2736 0.42 -0.1 333,229 + GFF2736 0.77 -0.3 333,229 + GFF2736 0.77 -1.1 333,230 - GFF2736 0.77 -0.6 333,663 + GFF2737 0.28 +0.3 333,663 + GFF2737 0.28 +0.6 333,664 - GFF2737 0.28 -0.9 333,664 - GFF2737 0.28 -0.3 333,664 - GFF2737 0.28 +0.7 333,766 - GFF2737 0.40 -0.9 333,766 - GFF2737 0.40 +1.5 333,879 + GFF2737 0.53 +0.1 333,879 + GFF2737 0.53 +0.9 334,161 + GFF2737 0.87 +0.2 334,161 + GFF2737 0.87 -0.9 334,252 + -0.6 334,261 - +0.5 334,261 - +0.5 334,406 + +0.2 334,406 + -0.5 334,406 + -0.3 334,407 - -0.5 334,407 - -0.1 334,502 + -0.0 334,503 - +0.0 334,503 - +0.4 334,503 - -0.5 334,503 - -0.5 334,503 - -0.6 334,540 + GFF2738 0.10 +0.7 334,625 + GFF2738 0.17 -1.5 334,626 - GFF2738 0.17 +1.2 334,772 + GFF2738 0.28 +1.2 334,773 - GFF2738 0.28 +0.1 334,805 - GFF2738 0.30 +0.1 334,889 + GFF2738 0.36 -0.1 334,955 + GFF2738 0.41 +0.1 334,955 + GFF2738 0.41 -0.8 334,956 - GFF2738 0.41 -0.7 334,956 - GFF2738 0.41 -0.7 334,956 - GFF2738 0.41 +0.8 335,087 + GFF2738 0.51 +0.4 335,087 + GFF2738 0.51 +0.2 335,088 - GFF2738 0.51 +0.2 335,105 + GFF2738 0.53 -1.1 335,210 + GFF2738 0.60 -0.4 335,210 + GFF2738 0.60 +0.1 335,211 - GFF2738 0.60 +0.5
Or see this region's nucleotide sequence