Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2711 and GFF2712 are separated by 33 nucleotides GFF2712 and GFF2713 overlap by 4 nucleotides GFF2713 and GFF2714 overlap by 4 nucleotides
GFF2711 - putative exported protein, at 302,181 to 303,161
GFF2711
GFF2712 - Dienelactone hydrolase family, at 303,195 to 303,866
GFF2712
GFF2713 - Aminopeptidase Y (Arg, Lys, Leu preference) (EC 3.4.11.15), at 303,863 to 305,188
GFF2713
GFF2714 - D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster, at 305,185 to 306,420
GFF2714
Position (kb) 303
304
305
306 Strain fitness (log2 ratio) -1
0
1 at 302.883 kb on + strand, within GFF2711 at 302.883 kb on - strand, within GFF2711 at 302.884 kb on - strand, within GFF2711 at 303.249 kb on + strand at 303.249 kb on + strand at 303.612 kb on + strand, within GFF2712 at 303.612 kb on + strand, within GFF2712 at 303.612 kb on + strand, within GFF2712 at 303.613 kb on - strand, within GFF2712 at 303.613 kb on - strand, within GFF2712 at 303.617 kb on - strand, within GFF2712 at 304.085 kb on + strand, within GFF2713 at 305.260 kb on + strand at 305.261 kb on - strand at 305.428 kb on + strand, within GFF2714 at 305.429 kb on - strand, within GFF2714 at 305.429 kb on - strand, within GFF2714 at 305.647 kb on + strand, within GFF2714 at 305.647 kb on + strand, within GFF2714 at 305.989 kb on + strand, within GFF2714
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 302,883 + GFF2711 0.72 +0.2 302,883 - GFF2711 0.72 -0.8 302,884 - GFF2711 0.72 -0.2 303,249 + +0.1 303,249 + +0.8 303,612 + GFF2712 0.62 +1.3 303,612 + GFF2712 0.62 +0.1 303,612 + GFF2712 0.62 -1.1 303,613 - GFF2712 0.62 -0.1 303,613 - GFF2712 0.62 -0.5 303,617 - GFF2712 0.63 +0.4 304,085 + GFF2713 0.17 +0.5 305,260 + -0.7 305,261 - +1.0 305,428 + GFF2714 0.20 +0.4 305,429 - GFF2714 0.20 +0.4 305,429 - GFF2714 0.20 +0.0 305,647 + GFF2714 0.37 -0.0 305,647 + GFF2714 0.37 -0.1 305,989 + GFF2714 0.65 -0.4
Or see this region's nucleotide sequence