Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2702

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2701 and GFF2702 are separated by 3 nucleotidesGFF2702 and GFF2703 are separated by 23 nucleotidesGFF2703 and GFF2704 are separated by 57 nucleotides GFF2701 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 291,810 to 294,395 GFF2701 GFF2702 - Membrane-bound metal-dependent hydrolase, at 294,399 to 295,415 GFF2702 GFF2703 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 295,439 to 296,062 GFF2703 GFF2704 - putative exported protein, at 296,120 to 296,716 GFF2704 Position (kb) 294 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 293.448 kb on + strand, within GFF2701at 293.448 kb on + strand, within GFF2701at 293.448 kb on + strand, within GFF2701at 293.449 kb on - strand, within GFF2701at 293.449 kb on - strand, within GFF2701at 293.590 kb on - strand, within GFF2701at 293.590 kb on - strand, within GFF2701at 293.590 kb on - strand, within GFF2701at 293.622 kb on + strand, within GFF2701at 293.623 kb on - strand, within GFF2701at 293.628 kb on + strand, within GFF2701at 293.628 kb on + strand, within GFF2701at 293.628 kb on + strand, within GFF2701at 293.628 kb on + strand, within GFF2701at 293.629 kb on - strand, within GFF2701at 293.629 kb on - strand, within GFF2701at 293.629 kb on - strand, within GFF2701at 293.629 kb on - strand, within GFF2701at 293.631 kb on + strand, within GFF2701at 293.632 kb on - strand, within GFF2701at 293.632 kb on - strand, within GFF2701at 293.632 kb on - strand, within GFF2701at 293.808 kb on + strand, within GFF2701at 293.809 kb on - strand, within GFF2701at 293.892 kb on + strand, within GFF2701at 293.892 kb on + strand, within GFF2701at 293.893 kb on - strand, within GFF2701at 293.895 kb on + strand, within GFF2701at 293.895 kb on + strand, within GFF2701at 293.895 kb on + strand, within GFF2701at 293.895 kb on + strand, within GFF2701at 293.896 kb on - strand, within GFF2701at 293.896 kb on - strand, within GFF2701at 293.919 kb on + strand, within GFF2701at 294.556 kb on + strand, within GFF2702at 294.557 kb on - strand, within GFF2702at 294.557 kb on - strand, within GFF2702at 294.622 kb on + strand, within GFF2702at 294.623 kb on - strand, within GFF2702at 294.658 kb on + strand, within GFF2702at 294.659 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.914 kb on - strand, within GFF2702at 294.914 kb on - strand, within GFF2702at 295.012 kb on + strand, within GFF2702at 295.012 kb on + strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.042 kb on - strand, within GFF2702at 295.042 kb on - strand, within GFF2702at 295.087 kb on + strand, within GFF2702at 295.101 kb on - strand, within GFF2702at 295.426 kb on + strandat 295.426 kb on + strandat 295.543 kb on + strand, within GFF2703at 295.543 kb on + strand, within GFF2703at 295.543 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.650 kb on + strand, within GFF2703at 295.651 kb on - strand, within GFF2703at 295.761 kb on + strand, within GFF2703at 295.869 kb on + strand, within GFF2703at 295.869 kb on + strand, within GFF2703at 295.869 kb on + strand, within GFF2703at 295.870 kb on - strand, within GFF2703at 295.929 kb on + strand, within GFF2703at 296.232 kb on + strand, within GFF2704at 296.247 kb on + strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.263 kb on - strand, within GFF2704at 296.409 kb on + strand, within GFF2704at 296.410 kb on - strand, within GFF2704at 296.410 kb on - strand, within GFF2704at 296.410 kb on - strand, within GFF2704

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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293,448 + GFF2701 0.63 -0.2
293,448 + GFF2701 0.63 -0.5
293,448 + GFF2701 0.63 +0.0
293,449 - GFF2701 0.63 -0.4
293,449 - GFF2701 0.63 -0.1
293,590 - GFF2701 0.69 -0.4
293,590 - GFF2701 0.69 -0.3
293,590 - GFF2701 0.69 -0.5
293,622 + GFF2701 0.70 -0.1
293,623 - GFF2701 0.70 -1.1
293,628 + GFF2701 0.70 +0.5
293,628 + GFF2701 0.70 +1.3
293,628 + GFF2701 0.70 +2.8
293,628 + GFF2701 0.70 -0.9
293,629 - GFF2701 0.70 +1.1
293,629 - GFF2701 0.70 -0.1
293,629 - GFF2701 0.70 +0.9
293,629 - GFF2701 0.70 -0.3
293,631 + GFF2701 0.70 -1.4
293,632 - GFF2701 0.70 -2.4
293,632 - GFF2701 0.70 -0.5
293,632 - GFF2701 0.70 -1.2
293,808 + GFF2701 0.77 -0.1
293,809 - GFF2701 0.77 -0.5
293,892 + GFF2701 0.81 -2.5
293,892 + GFF2701 0.81 -0.7
293,893 - GFF2701 0.81 -0.9
293,895 + GFF2701 0.81 -0.4
293,895 + GFF2701 0.81 -1.7
293,895 + GFF2701 0.81 +0.3
293,895 + GFF2701 0.81 +0.5
293,896 - GFF2701 0.81 +0.1
293,896 - GFF2701 0.81 +0.4
293,919 + GFF2701 0.82 +0.1
294,556 + GFF2702 0.15 -0.5
294,557 - GFF2702 0.16 +0.0
294,557 - GFF2702 0.16 +0.5
294,622 + GFF2702 0.22 +1.5
294,623 - GFF2702 0.22 -0.6
294,658 + GFF2702 0.25 -1.0
294,659 - GFF2702 0.26 +0.0
294,746 - GFF2702 0.34 +1.5
294,746 - GFF2702 0.34 +0.2
294,746 - GFF2702 0.34 +0.9
294,746 - GFF2702 0.34 -0.1
294,914 - GFF2702 0.51 -0.1
294,914 - GFF2702 0.51 +1.3
295,012 + GFF2702 0.60 -2.5
295,012 + GFF2702 0.60 +0.8
295,013 - GFF2702 0.60 -0.2
295,013 - GFF2702 0.60 +0.1
295,013 - GFF2702 0.60 -0.8
295,013 - GFF2702 0.60 -1.1
295,013 - GFF2702 0.60 -0.4
295,042 - GFF2702 0.63 +1.1
295,042 - GFF2702 0.63 -1.7
295,087 + GFF2702 0.68 +0.5
295,101 - GFF2702 0.69 -0.0
295,426 + -0.2
295,426 + +0.2
295,543 + GFF2703 0.17 +0.2
295,543 + GFF2703 0.17 +1.3
295,543 + GFF2703 0.17 -0.7
295,578 + GFF2703 0.22 -1.7
295,578 + GFF2703 0.22 -0.1
295,578 + GFF2703 0.22 +0.3
295,578 + GFF2703 0.22 +0.2
295,578 + GFF2703 0.22 +0.7
295,578 + GFF2703 0.22 +0.7
295,579 - GFF2703 0.22 -0.6
295,579 - GFF2703 0.22 -0.1
295,579 - GFF2703 0.22 -1.4
295,579 - GFF2703 0.22 +0.2
295,579 - GFF2703 0.22 -0.2
295,579 - GFF2703 0.22 -0.5
295,579 - GFF2703 0.22 +0.8
295,579 - GFF2703 0.22 -1.7
295,579 - GFF2703 0.22 +0.1
295,579 - GFF2703 0.22 +0.5
295,579 - GFF2703 0.22 -2.8
295,650 + GFF2703 0.34 +0.0
295,651 - GFF2703 0.34 -0.9
295,761 + GFF2703 0.52 +0.0
295,869 + GFF2703 0.69 +0.2
295,869 + GFF2703 0.69 +2.0
295,869 + GFF2703 0.69 +0.1
295,870 - GFF2703 0.69 -0.4
295,929 + GFF2703 0.79 -0.9
296,232 + GFF2704 0.19 -0.9
296,247 + GFF2704 0.21 -0.1
296,248 - GFF2704 0.21 -0.4
296,248 - GFF2704 0.21 +0.0
296,248 - GFF2704 0.21 +0.7
296,248 - GFF2704 0.21 +0.1
296,248 - GFF2704 0.21 -0.0
296,263 - GFF2704 0.24 +0.0
296,409 + GFF2704 0.48 +0.1
296,410 - GFF2704 0.49 -0.1
296,410 - GFF2704 0.49 +0.0
296,410 - GFF2704 0.49 -0.9

Or see this region's nucleotide sequence