Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2669 and GFF2670 are separated by 192 nucleotides GFF2670 and GFF2671 are separated by 76 nucleotides GFF2671 and GFF2672 overlap by 4 nucleotides GFF2672 and GFF2673 are separated by 109 nucleotides GFF2673 and GFF2674 are separated by 105 nucleotides
GFF2669 - Bll7425 protein, at 260,540 to 261,853
GFF2669
GFF2670 - hypothetical protein, at 262,046 to 262,390
GFF2670
GFF2671 - hypothetical protein, at 262,467 to 262,829
GFF2671
GFF2672 - hypothetical protein, at 262,826 to 263,098
GFF2672
GFF2673 - hypothetical protein, at 263,208 to 263,567
GFF2673
GFF2674 - Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme, at 263,673 to 264,599
GFF2674
Position (kb) 262
263 Strain fitness (log2 ratio) -1
0
1 at 261.558 kb on + strand, within GFF2669 at 261.558 kb on + strand, within GFF2669 at 261.558 kb on + strand, within GFF2669 at 261.558 kb on + strand, within GFF2669 at 261.559 kb on - strand, within GFF2669 at 261.559 kb on - strand, within GFF2669 at 261.559 kb on - strand, within GFF2669 at 261.559 kb on - strand, within GFF2669 at 261.915 kb on + strand at 261.969 kb on + strand at 262.585 kb on + strand, within GFF2671 at 262.585 kb on + strand, within GFF2671 at 262.586 kb on - strand, within GFF2671 at 262.586 kb on - strand, within GFF2671 at 262.881 kb on + strand, within GFF2672 at 262.881 kb on + strand, within GFF2672 at 262.881 kb on + strand, within GFF2672 at 262.881 kb on + strand, within GFF2672 at 262.881 kb on + strand, within GFF2672 at 262.882 kb on - strand, within GFF2672 at 262.882 kb on - strand, within GFF2672 at 263.160 kb on + strand at 263.161 kb on - strand at 263.161 kb on - strand at 263.260 kb on + strand, within GFF2673 at 263.260 kb on + strand, within GFF2673 at 263.261 kb on - strand, within GFF2673 at 263.389 kb on + strand, within GFF2673 at 263.410 kb on + strand, within GFF2673 at 263.410 kb on + strand, within GFF2673 at 263.410 kb on + strand, within GFF2673 at 263.411 kb on - strand, within GFF2673 at 263.411 kb on - strand, within GFF2673 at 263.585 kb on + strand at 263.586 kb on - strand at 263.596 kb on + strand at 263.596 kb on + strand at 263.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 261,558 + GFF2669 0.77 -0.5 261,558 + GFF2669 0.77 +1.4 261,558 + GFF2669 0.77 -0.9 261,558 + GFF2669 0.77 -0.5 261,559 - GFF2669 0.78 +1.3 261,559 - GFF2669 0.78 -0.2 261,559 - GFF2669 0.78 +0.5 261,559 - GFF2669 0.78 -0.4 261,915 + -0.5 261,969 + +0.0 262,585 + GFF2671 0.33 +1.7 262,585 + GFF2671 0.33 -0.1 262,586 - GFF2671 0.33 +0.9 262,586 - GFF2671 0.33 +1.3 262,881 + GFF2672 0.20 +0.5 262,881 + GFF2672 0.20 +0.5 262,881 + GFF2672 0.20 +0.2 262,881 + GFF2672 0.20 -1.0 262,881 + GFF2672 0.20 +1.1 262,882 - GFF2672 0.21 -0.1 262,882 - GFF2672 0.21 +0.1 263,160 + -0.4 263,161 - +1.1 263,161 - -0.3 263,260 + GFF2673 0.14 +0.3 263,260 + GFF2673 0.14 +0.0 263,261 - GFF2673 0.15 +0.1 263,389 + GFF2673 0.50 +0.6 263,410 + GFF2673 0.56 -0.0 263,410 + GFF2673 0.56 -0.1 263,410 + GFF2673 0.56 -1.0 263,411 - GFF2673 0.56 +1.5 263,411 - GFF2673 0.56 -0.2 263,585 + +0.2 263,586 - +0.9 263,596 + -0.4 263,596 + +0.2 263,674 + -0.5
Or see this region's nucleotide sequence