Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF26

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF25 and GFF26 are separated by 119 nucleotidesGFF26 and GFF27 are separated by 104 nucleotidesGFF27 and GFF28 are separated by 12 nucleotides GFF25 - putative monooxygenase, at 22,647 to 24,191 GFF25 GFF26 - hypothetical protein, at 24,311 to 25,072 GFF26 GFF27 - Pca regulon regulatory protein PcaR, at 25,177 to 25,941 GFF27 GFF28 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 25,954 to 26,481 GFF28 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1at 23.472 kb on + strand, within GFF25at 23.472 kb on + strand, within GFF25at 23.472 kb on + strand, within GFF25at 23.472 kb on + strand, within GFF25at 23.472 kb on + strand, within GFF25at 23.473 kb on - strand, within GFF25at 23.520 kb on + strand, within GFF25at 23.598 kb on + strand, within GFF25at 23.599 kb on - strand, within GFF25at 23.599 kb on - strand, within GFF25at 23.619 kb on + strand, within GFF25at 23.619 kb on + strand, within GFF25at 23.662 kb on - strand, within GFF25at 23.682 kb on + strand, within GFF25at 23.683 kb on - strand, within GFF25at 23.911 kb on - strand, within GFF25at 23.946 kb on - strand, within GFF25at 23.979 kb on + strand, within GFF25at 23.979 kb on + strand, within GFF25at 23.979 kb on + strand, within GFF25at 23.979 kb on + strand, within GFF25at 23.980 kb on - strand, within GFF25at 23.980 kb on - strand, within GFF25at 23.980 kb on - strand, within GFF25at 23.980 kb on - strand, within GFF25at 24.165 kb on + strandat 24.491 kb on + strand, within GFF26at 24.927 kb on - strand, within GFF26at 24.927 kb on - strand, within GFF26at 24.927 kb on - strand, within GFF26at 25.057 kb on + strandat 25.057 kb on + strandat 25.057 kb on + strandat 25.057 kb on + strandat 25.058 kb on - strandat 25.294 kb on + strand, within GFF27at 25.295 kb on - strand, within GFF27at 25.321 kb on + strand, within GFF27at 25.322 kb on - strand, within GFF27at 25.385 kb on - strand, within GFF27at 25.390 kb on + strand, within GFF27at 25.390 kb on + strand, within GFF27at 25.391 kb on - strand, within GFF27at 25.391 kb on - strand, within GFF27at 25.501 kb on + strand, within GFF27at 25.501 kb on + strand, within GFF27at 25.501 kb on + strand, within GFF27at 25.501 kb on + strand, within GFF27at 25.502 kb on - strand, within GFF27at 25.502 kb on - strand, within GFF27at 25.570 kb on + strand, within GFF27at 25.570 kb on + strand, within GFF27at 25.570 kb on + strand, within GFF27at 25.571 kb on - strand, within GFF27at 25.726 kb on + strand, within GFF27at 25.726 kb on + strand, within GFF27at 25.727 kb on - strand, within GFF27at 25.727 kb on - strand, within GFF27at 25.852 kb on + strand, within GFF27at 25.853 kb on - strand, within GFF27

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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23,472 + GFF25 0.53 +0.0
23,472 + GFF25 0.53 +0.2
23,472 + GFF25 0.53 +0.6
23,472 + GFF25 0.53 -0.3
23,472 + GFF25 0.53 +0.3
23,473 - GFF25 0.53 +0.2
23,520 + GFF25 0.57 +0.6
23,598 + GFF25 0.62 -0.3
23,599 - GFF25 0.62 -0.3
23,599 - GFF25 0.62 -2.4
23,619 + GFF25 0.63 -0.7
23,619 + GFF25 0.63 -0.3
23,662 - GFF25 0.66 -0.7
23,682 + GFF25 0.67 -0.5
23,683 - GFF25 0.67 -0.2
23,911 - GFF25 0.82 +1.0
23,946 - GFF25 0.84 -0.8
23,979 + GFF25 0.86 -0.6
23,979 + GFF25 0.86 +0.9
23,979 + GFF25 0.86 -0.6
23,979 + GFF25 0.86 -0.8
23,980 - GFF25 0.86 +0.3
23,980 - GFF25 0.86 +0.7
23,980 - GFF25 0.86 +0.5
23,980 - GFF25 0.86 -0.6
24,165 + -0.2
24,491 + GFF26 0.24 -2.7
24,927 - GFF26 0.81 -0.2
24,927 - GFF26 0.81 -0.3
24,927 - GFF26 0.81 +0.3
25,057 + +0.1
25,057 + +0.6
25,057 + -0.4
25,057 + +0.4
25,058 - +0.4
25,294 + GFF27 0.15 -0.3
25,295 - GFF27 0.15 +1.4
25,321 + GFF27 0.19 -0.1
25,322 - GFF27 0.19 -0.3
25,385 - GFF27 0.27 +0.7
25,390 + GFF27 0.28 -0.1
25,390 + GFF27 0.28 +0.1
25,391 - GFF27 0.28 -0.6
25,391 - GFF27 0.28 +0.7
25,501 + GFF27 0.42 +0.2
25,501 + GFF27 0.42 -0.7
25,501 + GFF27 0.42 -1.5
25,501 + GFF27 0.42 +0.4
25,502 - GFF27 0.42 +0.6
25,502 - GFF27 0.42 +0.5
25,570 + GFF27 0.51 -1.2
25,570 + GFF27 0.51 -0.6
25,570 + GFF27 0.51 -0.2
25,571 - GFF27 0.52 -0.2
25,726 + GFF27 0.72 -0.8
25,726 + GFF27 0.72 -1.0
25,727 - GFF27 0.72 +0.3
25,727 - GFF27 0.72 +0.9
25,852 + GFF27 0.88 +0.1
25,853 - GFF27 0.88 +0.2

Or see this region's nucleotide sequence