Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2561 and GFF2562 overlap by 4 nucleotides GFF2562 and GFF2563 are separated by 132 nucleotides GFF2563 and GFF2564 are separated by 207 nucleotides GFF2564 and GFF2565 overlap by 4 nucleotides GFF2565 and GFF2566 are separated by 21 nucleotides
GFF2561 - hypothetical protein, at 150,760 to 151,221
GFF2561
GFF2562 - hypothetical protein, at 151,218 to 151,877
GFF2562
GFF2563 - hypothetical protein, at 152,010 to 152,600
GFF2563
GFF2564 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 152,808 to 153,347
GFF2564
GFF2565 - hypothetical protein, at 153,344 to 153,472
GFF2565
GFF2566 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 153,494 to 157,093
GFF2566
Position (kb) 152
153 Strain fitness (log2 ratio) -1
0
1
2 at 151.237 kb on + strand at 151.237 kb on + strand at 151.237 kb on + strand at 151.238 kb on - strand at 151.238 kb on - strand at 151.238 kb on - strand at 151.238 kb on - strand at 151.238 kb on - strand at 151.238 kb on - strand at 151.238 kb on - strand at 151.255 kb on + strand at 151.255 kb on + strand at 151.255 kb on + strand at 151.255 kb on + strand at 151.256 kb on - strand at 151.288 kb on + strand, within GFF2562 at 151.288 kb on + strand, within GFF2562 at 151.288 kb on + strand, within GFF2562 at 151.288 kb on + strand, within GFF2562 at 151.288 kb on + strand, within GFF2562 at 151.288 kb on + strand, within GFF2562 at 151.288 kb on + strand, within GFF2562 at 151.289 kb on - strand, within GFF2562 at 151.289 kb on - strand, within GFF2562 at 151.289 kb on - strand, within GFF2562 at 151.289 kb on - strand, within GFF2562 at 151.294 kb on + strand, within GFF2562 at 151.294 kb on + strand, within GFF2562 at 151.294 kb on + strand, within GFF2562 at 151.294 kb on + strand, within GFF2562 at 151.294 kb on + strand, within GFF2562 at 151.294 kb on + strand, within GFF2562 at 151.295 kb on - strand, within GFF2562 at 151.295 kb on - strand, within GFF2562 at 151.295 kb on - strand, within GFF2562 at 151.295 kb on - strand, within GFF2562 at 151.295 kb on - strand, within GFF2562 at 151.295 kb on - strand, within GFF2562 at 151.295 kb on - strand, within GFF2562 at 151.315 kb on + strand, within GFF2562 at 151.315 kb on + strand, within GFF2562 at 151.315 kb on + strand, within GFF2562 at 151.316 kb on - strand, within GFF2562 at 151.316 kb on - strand, within GFF2562 at 152.030 kb on - strand at 152.030 kb on - strand at 152.030 kb on - strand at 152.030 kb on - strand at 152.030 kb on - strand at 152.030 kb on - strand at 152.056 kb on + strand at 152.056 kb on + strand at 152.057 kb on - strand at 152.057 kb on - strand at 152.057 kb on - strand at 152.057 kb on - strand at 152.060 kb on + strand at 152.060 kb on + strand at 152.061 kb on - strand at 152.061 kb on - strand at 152.090 kb on - strand, within GFF2563 at 152.090 kb on - strand, within GFF2563 at 152.090 kb on - strand, within GFF2563 at 152.100 kb on - strand, within GFF2563 at 152.387 kb on - strand, within GFF2563 at 152.645 kb on + strand at 152.646 kb on - strand at 152.646 kb on - strand at 152.646 kb on - strand at 152.646 kb on - strand at 152.707 kb on + strand at 152.707 kb on + strand at 152.708 kb on - strand at 152.708 kb on - strand at 152.746 kb on - strand at 152.770 kb on - strand at 152.803 kb on + strand at 152.803 kb on + strand at 152.803 kb on + strand at 152.804 kb on - strand at 152.804 kb on - strand at 152.804 kb on - strand at 152.831 kb on + strand at 152.831 kb on + strand at 152.842 kb on - strand at 153.013 kb on + strand, within GFF2564 at 153.013 kb on + strand, within GFF2564 at 153.013 kb on + strand, within GFF2564 at 153.013 kb on + strand, within GFF2564 at 153.014 kb on - strand, within GFF2564 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.394 kb on + strand, within GFF2565 at 153.395 kb on - strand, within GFF2565 at 153.395 kb on - strand, within GFF2565 at 153.395 kb on - strand, within GFF2565 at 153.395 kb on - strand, within GFF2565 at 153.395 kb on - strand, within GFF2565 at 153.395 kb on - strand, within GFF2565 at 153.395 kb on - strand, within GFF2565 at 153.395 kb on - strand, within GFF2565 at 153.426 kb on - strand, within GFF2565 at 153.557 kb on + strand at 153.558 kb on - strand at 153.558 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 151,237 + -1.4 151,237 + +0.4 151,237 + +0.3 151,238 - +0.4 151,238 - -0.2 151,238 - +0.1 151,238 - +0.4 151,238 - +1.3 151,238 - +0.4 151,238 - +0.0 151,255 + +0.5 151,255 + +0.0 151,255 + +1.4 151,255 + +0.1 151,256 - -0.0 151,288 + GFF2562 0.11 +1.7 151,288 + GFF2562 0.11 -0.6 151,288 + GFF2562 0.11 -0.4 151,288 + GFF2562 0.11 +0.7 151,288 + GFF2562 0.11 +0.4 151,288 + GFF2562 0.11 -1.7 151,288 + GFF2562 0.11 -1.5 151,289 - GFF2562 0.11 +0.2 151,289 - GFF2562 0.11 +2.0 151,289 - GFF2562 0.11 +0.7 151,289 - GFF2562 0.11 +0.4 151,294 + GFF2562 0.12 +1.2 151,294 + GFF2562 0.12 +1.0 151,294 + GFF2562 0.12 -0.3 151,294 + GFF2562 0.12 +0.1 151,294 + GFF2562 0.12 +0.7 151,294 + GFF2562 0.12 +2.0 151,295 - GFF2562 0.12 +0.2 151,295 - GFF2562 0.12 -0.1 151,295 - GFF2562 0.12 +0.3 151,295 - GFF2562 0.12 +0.2 151,295 - GFF2562 0.12 -0.0 151,295 - GFF2562 0.12 +0.2 151,295 - GFF2562 0.12 +1.6 151,315 + GFF2562 0.15 -0.3 151,315 + GFF2562 0.15 -0.7 151,315 + GFF2562 0.15 +1.1 151,316 - GFF2562 0.15 -0.1 151,316 - GFF2562 0.15 -0.4 152,030 - +0.2 152,030 - +0.4 152,030 - +0.7 152,030 - -0.4 152,030 - -0.0 152,030 - +0.3 152,056 + -0.1 152,056 + +0.4 152,057 - +0.1 152,057 - -1.6 152,057 - -0.6 152,057 - +0.6 152,060 + +1.3 152,060 + -0.4 152,061 - -0.3 152,061 - +0.2 152,090 - GFF2563 0.14 +1.4 152,090 - GFF2563 0.14 -0.0 152,090 - GFF2563 0.14 +0.6 152,100 - GFF2563 0.15 +0.6 152,387 - GFF2563 0.64 +0.0 152,645 + -0.7 152,646 - -0.8 152,646 - -0.2 152,646 - -0.2 152,646 - -0.4 152,707 + -1.2 152,707 + -0.8 152,708 - -0.4 152,708 - -0.7 152,746 - -1.6 152,770 - +1.0 152,803 + -0.2 152,803 + -0.1 152,803 + +0.4 152,804 - -1.2 152,804 - -0.4 152,804 - -0.3 152,831 + -1.0 152,831 + -0.6 152,842 - +0.1 153,013 + GFF2564 0.38 +0.3 153,013 + GFF2564 0.38 -0.9 153,013 + GFF2564 0.38 -0.2 153,013 + GFF2564 0.38 -0.1 153,014 - GFF2564 0.38 -1.3 153,394 + GFF2565 0.39 -0.5 153,394 + GFF2565 0.39 +0.4 153,394 + GFF2565 0.39 -0.5 153,394 + GFF2565 0.39 -0.0 153,394 + GFF2565 0.39 -0.6 153,394 + GFF2565 0.39 -1.1 153,394 + GFF2565 0.39 +0.8 153,394 + GFF2565 0.39 -0.4 153,394 + GFF2565 0.39 -0.0 153,394 + GFF2565 0.39 +0.0 153,394 + GFF2565 0.39 +0.3 153,394 + GFF2565 0.39 -0.8 153,394 + GFF2565 0.39 -0.3 153,394 + GFF2565 0.39 -1.0 153,394 + GFF2565 0.39 +0.1 153,394 + GFF2565 0.39 -0.7 153,395 - GFF2565 0.40 -0.8 153,395 - GFF2565 0.40 -0.9 153,395 - GFF2565 0.40 +0.2 153,395 - GFF2565 0.40 -0.1 153,395 - GFF2565 0.40 -0.6 153,395 - GFF2565 0.40 -0.2 153,395 - GFF2565 0.40 -0.7 153,395 - GFF2565 0.40 -0.1 153,426 - GFF2565 0.64 -0.3 153,557 + -1.0 153,558 - -0.4 153,558 - +0.1
Or see this region's nucleotide sequence