Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2533

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
113,182	+		GFF2531	0.52	+1.0
113,182	+		GFF2531	0.52	-1.4
113,182	+		GFF2531	0.52	-1.6
113,182	+		GFF2531	0.52	-0.8
113,182	+		GFF2531	0.52	-0.3
113,182	+		GFF2531	0.52	-0.0
113,182	+		GFF2531	0.52	-0.5
113,182	+		GFF2531	0.52	-1.6
113,182	+		GFF2531	0.52	-0.1
113,182	+		GFF2531	0.52	+0.3
113,183	-		GFF2531	0.52	+0.7
113,183	-		GFF2531	0.52	+0.5
113,183	-		GFF2531	0.52	-0.4
113,183	-		GFF2531	0.52	-0.0
113,183	-		GFF2531	0.52	-0.3
113,183	-		GFF2531	0.52	+1.4
113,183	-		GFF2531	0.52	+0.1
113,183	-		GFF2531	0.52	-0.4
113,183	-		GFF2531	0.52	-0.3
113,183	-		GFF2531	0.52	+0.1
113,183	-		GFF2531	0.52	+1.4
113,225	-		GFF2531	0.57	-1.1
113,233	+		GFF2531	0.58	-0.0
113,233	+		GFF2531	0.58	+0.2
113,233	+		GFF2531	0.58	+0.1
113,234	-		GFF2531	0.58	-0.1
113,234	-		GFF2531	0.58	-0.1
113,234	-		GFF2531	0.58	-0.3
113,234	-		GFF2531	0.58	-0.3
113,234	-		GFF2531	0.58	-0.1
113,234	-		GFF2531	0.58	-0.7
113,234	-		GFF2531	0.58	-1.1
113,512	-				-0.9
114,023	+		GFF2532	0.78	-1.6
114,023	+		GFF2532	0.78	+0.3
114,023	+		GFF2532	0.78	+0.3
114,023	+		GFF2532	0.78	-0.3
114,024	-		GFF2532	0.78	-0.1
114,024	-		GFF2532	0.78	+0.3
114,449	+				+0.6
114,449	+				+1.4
114,449	+				+0.9
114,449	+				-0.6
114,449	+				+1.5
114,449	+				+0.6
114,719	+		GFF2533	0.19	+1.1
114,729	-		GFF2533	0.19	-0.1
114,857	+		GFF2533	0.24	+0.3
114,858	-		GFF2533	0.24	+1.4
114,890	+		GFF2533	0.25	+0.7
114,951	-		GFF2533	0.27	+0.6
115,295	+		GFF2533	0.40	+0.6
115,296	-		GFF2533	0.40	+0.7
115,296	-		GFF2533	0.40	+0.3
115,296	-		GFF2533	0.40	-1.6
115,376	+		GFF2533	0.42	-0.6
115,376	+		GFF2533	0.42	+1.6
115,377	-		GFF2533	0.42	+0.8
115,377	-		GFF2533	0.42	+2.0
115,377	-		GFF2533	0.42	+3.4
115,755	-		GFF2533	0.56	+1.5
115,755	-		GFF2533	0.56	+1.3
115,866	-		GFF2533	0.60	+1.6
116,132	+		GFF2533	0.69	+1.2
116,132	+		GFF2533	0.69	+1.2
116,142	-		GFF2533	0.69	+0.9
116,276	+		GFF2533	0.74	+1.1
116,276	+		GFF2533	0.74	-0.5
116,277	-		GFF2533	0.74	+1.9
116,277	-		GFF2533	0.74	+0.9
116,277	-		GFF2533	0.74	+1.6
116,390	+		GFF2533	0.78	-0.4
116,390	+		GFF2533	0.78	+0.7
116,390	+		GFF2533	0.78	+1.9
116,390	+		GFF2533	0.78	-0.1
116,390	+		GFF2533	0.78	+0.9
116,391	-		GFF2533	0.78	+0.8
116,391	-		GFF2533	0.78	+1.1
116,391	-		GFF2533	0.78	+1.3
116,391	-		GFF2533	0.78	+0.6
116,391	-		GFF2533	0.78	+0.7
116,391	-		GFF2533	0.78	+1.7
116,391	-		GFF2533	0.78	+1.0
116,391	-		GFF2533	0.78	+1.3
116,417	+		GFF2533	0.79	+0.4
116,417	+		GFF2533	0.79	+2.0
116,417	+		GFF2533	0.79	+0.7
116,480	+		GFF2533	0.81	+1.2
116,481	-		GFF2533	0.81	+1.2
116,481	-		GFF2533	0.81	+1.4
116,487	-		GFF2533	0.82	+1.1
116,487	-		GFF2533	0.82	+0.6
116,487	-		GFF2533	0.82	+1.3
116,487	-		GFF2533	0.82	+0.7
116,487	-		GFF2533	0.82	+1.4
116,487	-		GFF2533	0.82	+1.0
116,487	-		GFF2533	0.82	+0.4
116,868	-				+0.6
117,003	+				+0.2
117,003	+				+1.2
117,003	+				+0.2
117,003	+				+0.9
117,003	+				+0.8
117,004	-				-0.1
117,004	-				+0.3
117,789	+		GFF2534	0.17	+0.1
117,789	+		GFF2534	0.17	+0.4
117,789	+		GFF2534	0.17	+0.3
117,790	-		GFF2534	0.17	-0.5