Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2532

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
112,728	+				-1.0
112,728	+				+0.1
112,729	-				+0.4
112,747	+				-0.1
112,747	+				+1.3
112,748	-				-0.1
112,999	+		GFF2531	0.30	+0.9
112,999	+		GFF2531	0.30	-1.1
112,999	+		GFF2531	0.30	+0.5
112,999	+		GFF2531	0.30	-0.4
113,000	-		GFF2531	0.31	-0.9
113,000	-		GFF2531	0.31	+0.9
113,000	-		GFF2531	0.31	-0.3
113,000	-		GFF2531	0.31	+0.8
113,182	+		GFF2531	0.52	+1.0
113,182	+		GFF2531	0.52	-1.4
113,182	+		GFF2531	0.52	-1.6
113,182	+		GFF2531	0.52	-0.8
113,182	+		GFF2531	0.52	-0.3
113,182	+		GFF2531	0.52	-0.0
113,182	+		GFF2531	0.52	-0.5
113,182	+		GFF2531	0.52	-1.6
113,182	+		GFF2531	0.52	-0.1
113,182	+		GFF2531	0.52	+0.3
113,183	-		GFF2531	0.52	+0.7
113,183	-		GFF2531	0.52	+0.5
113,183	-		GFF2531	0.52	-0.4
113,183	-		GFF2531	0.52	-0.0
113,183	-		GFF2531	0.52	-0.3
113,183	-		GFF2531	0.52	+1.4
113,183	-		GFF2531	0.52	+0.1
113,183	-		GFF2531	0.52	-0.4
113,183	-		GFF2531	0.52	-0.3
113,183	-		GFF2531	0.52	+0.1
113,183	-		GFF2531	0.52	+1.4
113,225	-		GFF2531	0.57	-1.1
113,233	+		GFF2531	0.58	-0.0
113,233	+		GFF2531	0.58	+0.2
113,233	+		GFF2531	0.58	+0.1
113,234	-		GFF2531	0.58	-0.1
113,234	-		GFF2531	0.58	-0.1
113,234	-		GFF2531	0.58	-0.3
113,234	-		GFF2531	0.58	-0.3
113,234	-		GFF2531	0.58	-0.1
113,234	-		GFF2531	0.58	-0.7
113,234	-		GFF2531	0.58	-1.1
113,512	-				-0.9
114,023	+		GFF2532	0.78	-1.6
114,023	+		GFF2532	0.78	+0.3
114,023	+		GFF2532	0.78	+0.3
114,023	+		GFF2532	0.78	-0.3
114,024	-		GFF2532	0.78	-0.1
114,024	-		GFF2532	0.78	+0.3
114,449	+				+0.6
114,449	+				+1.4
114,449	+				+0.9
114,449	+				-0.6
114,449	+				+1.5
114,449	+				+0.6
114,719	+		GFF2533	0.19	+1.1
114,729	-		GFF2533	0.19	-0.1
114,857	+		GFF2533	0.24	+0.3
114,858	-		GFF2533	0.24	+1.4
114,890	+		GFF2533	0.25	+0.7
114,951	-		GFF2533	0.27	+0.6