Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2481 and GFF2482 overlap by 11 nucleotides GFF2482 and GFF2483 overlap by 4 nucleotides
GFF2481 - putative exported protein, at 63,517 to 64,608
GFF2481
GFF2482 - Iron-regulated protein A precursor, at 64,598 to 65,692
GFF2482
GFF2483 - Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites, at 65,689 to 67,143
GFF2483
Position (kb) 64
65
66 Strain fitness (log2 ratio) -1
0
1 at 65.178 kb on + strand, within GFF2482 at 65.179 kb on - strand, within GFF2482 at 65.551 kb on - strand, within GFF2482 at 65.580 kb on + strand, within GFF2482 at 65.581 kb on - strand, within GFF2482 at 65.581 kb on - strand, within GFF2482 at 65.581 kb on - strand, within GFF2482 at 65.581 kb on - strand, within GFF2482 at 65.583 kb on + strand at 65.584 kb on - strand at 65.584 kb on - strand at 65.666 kb on + strand at 65.667 kb on - strand at 65.667 kb on - strand at 65.692 kb on + strand at 65.693 kb on - strand at 65.966 kb on + strand, within GFF2483 at 65.966 kb on + strand, within GFF2483 at 65.967 kb on - strand, within GFF2483 at 65.967 kb on - strand, within GFF2483 at 66.035 kb on + strand, within GFF2483 at 66.035 kb on + strand, within GFF2483 at 66.035 kb on + strand, within GFF2483 at 66.036 kb on - strand, within GFF2483 at 66.036 kb on - strand, within GFF2483 at 66.146 kb on + strand, within GFF2483 at 66.147 kb on - strand, within GFF2483 at 66.581 kb on + strand, within GFF2483 at 66.582 kb on - strand, within GFF2483 at 66.602 kb on + strand, within GFF2483 at 66.602 kb on + strand, within GFF2483 at 66.603 kb on - strand, within GFF2483 at 66.623 kb on + strand, within GFF2483 at 66.623 kb on + strand, within GFF2483
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 65,178 + GFF2482 0.53 -0.3 65,179 - GFF2482 0.53 -0.4 65,551 - GFF2482 0.87 -0.7 65,580 + GFF2482 0.90 -0.5 65,581 - GFF2482 0.90 -0.1 65,581 - GFF2482 0.90 -0.1 65,581 - GFF2482 0.90 -0.6 65,581 - GFF2482 0.90 +0.6 65,583 + -0.8 65,584 - -0.1 65,584 - -0.0 65,666 + +0.4 65,667 - -0.3 65,667 - -0.6 65,692 + -0.1 65,693 - -0.8 65,966 + GFF2483 0.19 -1.6 65,966 + GFF2483 0.19 -1.4 65,967 - GFF2483 0.19 -0.1 65,967 - GFF2483 0.19 +0.0 66,035 + GFF2483 0.24 +1.2 66,035 + GFF2483 0.24 +0.6 66,035 + GFF2483 0.24 -0.7 66,036 - GFF2483 0.24 +0.5 66,036 - GFF2483 0.24 +0.4 66,146 + GFF2483 0.31 -0.2 66,147 - GFF2483 0.31 -0.2 66,581 + GFF2483 0.61 -0.6 66,582 - GFF2483 0.61 +1.4 66,602 + GFF2483 0.63 +0.9 66,602 + GFF2483 0.63 +0.3 66,603 - GFF2483 0.63 +0.1 66,623 + GFF2483 0.64 +0.7 66,623 + GFF2483 0.64 -1.3
Or see this region's nucleotide sequence