Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2438 and GFF2439 are separated by 85 nucleotides GFF2439 and GFF2440 are separated by 21 nucleotides GFF2440 and GFF2441 are separated by 192 nucleotides
GFF2438 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 19,653 to 20,180
GFF2438
GFF2439 - hypothetical protein, at 20,266 to 20,976
GFF2439
GFF2440 - Adenine phosphoribosyltransferase (EC 2.4.2.7), at 20,998 to 21,543
GFF2440
GFF2441 - Glutathione-regulated potassium-efflux system protein KefB, at 21,736 to 23,721
GFF2441
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 20.125 kb on - strand, within GFF2438 at 20.148 kb on + strand at 20.148 kb on + strand at 20.148 kb on + strand at 20.148 kb on + strand at 20.148 kb on + strand at 20.148 kb on + strand at 20.148 kb on + strand at 20.148 kb on + strand at 20.148 kb on + strand at 20.148 kb on + strand at 20.148 kb on + strand at 20.149 kb on - strand at 20.149 kb on - strand at 20.149 kb on - strand at 20.149 kb on - strand at 20.285 kb on + strand at 20.286 kb on - strand at 20.464 kb on + strand, within GFF2439 at 20.464 kb on + strand, within GFF2439 at 20.464 kb on + strand, within GFF2439 at 20.465 kb on - strand, within GFF2439 at 20.558 kb on - strand, within GFF2439 at 20.558 kb on - strand, within GFF2439 at 20.629 kb on + strand, within GFF2439 at 20.881 kb on + strand, within GFF2439 at 21.239 kb on + strand, within GFF2440 at 21.240 kb on - strand, within GFF2440 at 21.251 kb on + strand, within GFF2440 at 21.251 kb on + strand, within GFF2440 at 21.251 kb on + strand, within GFF2440 at 21.251 kb on + strand, within GFF2440 at 21.251 kb on + strand, within GFF2440 at 21.251 kb on + strand, within GFF2440 at 21.252 kb on - strand, within GFF2440 at 21.252 kb on - strand, within GFF2440 at 21.252 kb on - strand, within GFF2440 at 21.252 kb on - strand, within GFF2440 at 21.252 kb on - strand, within GFF2440 at 21.252 kb on - strand, within GFF2440 at 21.323 kb on + strand, within GFF2440 at 21.324 kb on - strand, within GFF2440 at 21.401 kb on + strand, within GFF2440 at 21.401 kb on + strand, within GFF2440 at 21.401 kb on + strand, within GFF2440 at 21.402 kb on - strand, within GFF2440 at 21.402 kb on - strand, within GFF2440 at 21.572 kb on - strand at 21.572 kb on - strand at 21.572 kb on - strand at 21.577 kb on - strand at 21.637 kb on + strand at 21.637 kb on + strand at 21.637 kb on + strand at 21.637 kb on + strand at 21.637 kb on + strand at 21.637 kb on + strand at 21.638 kb on - strand at 21.638 kb on - strand at 21.638 kb on - strand at 21.638 kb on - strand at 21.638 kb on - strand at 21.638 kb on - strand at 22.007 kb on + strand, within GFF2441 at 22.008 kb on - strand, within GFF2441 at 22.025 kb on + strand, within GFF2441 at 22.025 kb on + strand, within GFF2441 at 22.025 kb on + strand, within GFF2441 at 22.025 kb on + strand, within GFF2441 at 22.025 kb on + strand, within GFF2441 at 22.026 kb on - strand, within GFF2441 at 22.026 kb on - strand, within GFF2441 at 22.207 kb on + strand, within GFF2441 at 22.208 kb on - strand, within GFF2441 at 22.268 kb on + strand, within GFF2441 at 22.268 kb on + strand, within GFF2441 at 22.268 kb on + strand, within GFF2441 at 22.268 kb on + strand, within GFF2441 at 22.269 kb on - strand, within GFF2441 at 22.406 kb on + strand, within GFF2441 at 22.406 kb on + strand, within GFF2441 at 22.406 kb on + strand, within GFF2441 at 22.406 kb on + strand, within GFF2441 at 22.406 kb on + strand, within GFF2441 at 22.407 kb on - strand, within GFF2441
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 20,125 - GFF2438 0.89 -0.9 20,148 + -0.6 20,148 + -0.3 20,148 + +0.6 20,148 + -0.8 20,148 + -0.6 20,148 + +0.3 20,148 + +0.1 20,148 + +0.2 20,148 + -0.3 20,148 + -0.5 20,148 + -0.8 20,149 - -0.8 20,149 - -1.1 20,149 - +0.5 20,149 - -0.3 20,285 + +0.7 20,286 - -0.3 20,464 + GFF2439 0.28 -0.4 20,464 + GFF2439 0.28 +1.0 20,464 + GFF2439 0.28 -0.3 20,465 - GFF2439 0.28 +0.9 20,558 - GFF2439 0.41 +0.0 20,558 - GFF2439 0.41 -0.4 20,629 + GFF2439 0.51 -0.6 20,881 + GFF2439 0.86 -0.5 21,239 + GFF2440 0.44 +0.7 21,240 - GFF2440 0.44 +1.1 21,251 + GFF2440 0.46 +0.4 21,251 + GFF2440 0.46 +0.2 21,251 + GFF2440 0.46 +0.2 21,251 + GFF2440 0.46 +0.6 21,251 + GFF2440 0.46 +0.3 21,251 + GFF2440 0.46 +0.4 21,252 - GFF2440 0.47 +0.9 21,252 - GFF2440 0.47 -0.1 21,252 - GFF2440 0.47 +0.8 21,252 - GFF2440 0.47 -1.4 21,252 - GFF2440 0.47 +0.2 21,252 - GFF2440 0.47 +1.1 21,323 + GFF2440 0.60 -0.0 21,324 - GFF2440 0.60 +0.6 21,401 + GFF2440 0.74 +1.3 21,401 + GFF2440 0.74 +1.4 21,401 + GFF2440 0.74 +1.9 21,402 - GFF2440 0.74 +1.3 21,402 - GFF2440 0.74 +0.6 21,572 - -0.3 21,572 - +0.6 21,572 - +0.7 21,577 - -0.1 21,637 + -1.6 21,637 + +0.9 21,637 + -0.1 21,637 + -0.4 21,637 + -1.1 21,637 + +0.3 21,638 - +0.9 21,638 - -0.1 21,638 - -0.1 21,638 - +0.0 21,638 - -0.6 21,638 - -0.3 22,007 + GFF2441 0.14 +1.0 22,008 - GFF2441 0.14 -0.3 22,025 + GFF2441 0.15 -0.7 22,025 + GFF2441 0.15 -0.4 22,025 + GFF2441 0.15 -0.4 22,025 + GFF2441 0.15 -0.6 22,025 + GFF2441 0.15 +0.0 22,026 - GFF2441 0.15 +1.4 22,026 - GFF2441 0.15 -0.4 22,207 + GFF2441 0.24 +1.4 22,208 - GFF2441 0.24 -0.6 22,268 + GFF2441 0.27 -0.2 22,268 + GFF2441 0.27 -0.0 22,268 + GFF2441 0.27 +0.1 22,268 + GFF2441 0.27 +0.1 22,269 - GFF2441 0.27 -0.0 22,406 + GFF2441 0.34 +0.2 22,406 + GFF2441 0.34 -0.1 22,406 + GFF2441 0.34 +0.2 22,406 + GFF2441 0.34 -1.5 22,406 + GFF2441 0.34 -1.9 22,407 - GFF2441 0.34 -1.6
Or see this region's nucleotide sequence