Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2428

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2427 and GFF2428 are separated by 14 nucleotidesGFF2428 and GFF2429 overlap by 4 nucleotides GFF2427 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 6,532 to 7,566 GFF2427 GFF2428 - TRAP-type C4-dicarboxylate transport system, small permease component, at 7,581 to 8,162 GFF2428 GFF2429 - TRAP-type C4-dicarboxylate transport system, large permease component, at 8,159 to 9,439 GFF2429 Position (kb) 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6.661 kb on + strand, within GFF2427at 6.661 kb on + strand, within GFF2427at 6.813 kb on + strand, within GFF2427at 6.985 kb on - strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.094 kb on - strand, within GFF2427at 7.153 kb on + strand, within GFF2427at 7.154 kb on - strand, within GFF2427at 7.226 kb on - strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.498 kb on + strandat 7.498 kb on + strandat 7.498 kb on + strandat 7.499 kb on - strandat 7.565 kb on - strandat 7.565 kb on - strandat 7.605 kb on + strandat 7.965 kb on + strand, within GFF2428at 7.965 kb on + strand, within GFF2428at 7.965 kb on + strand, within GFF2428at 7.965 kb on + strand, within GFF2428at 8.153 kb on + strandat 8.154 kb on - strandat 8.154 kb on - strandat 8.197 kb on + strandat 8.198 kb on - strandat 8.222 kb on + strandat 8.223 kb on - strandat 8.344 kb on + strand, within GFF2429at 8.345 kb on - strand, within GFF2429at 8.345 kb on - strand, within GFF2429at 8.441 kb on + strand, within GFF2429at 8.442 kb on - strand, within GFF2429at 8.442 kb on - strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.808 kb on + strand, within GFF2429at 8.897 kb on + strand, within GFF2429at 8.897 kb on + strand, within GFF2429at 8.897 kb on + strand, within GFF2429at 8.897 kb on + strand, within GFF2429at 8.898 kb on - strand, within GFF2429at 8.898 kb on - strand, within GFF2429at 8.898 kb on - strand, within GFF2429at 8.898 kb on - strand, within GFF2429at 8.898 kb on - strand, within GFF2429at 8.925 kb on - strand, within GFF2429at 9.052 kb on + strand, within GFF2429at 9.053 kb on - strand, within GFF2429at 9.053 kb on - strand, within GFF2429at 9.053 kb on - strand, within GFF2429at 9.053 kb on - strand, within GFF2429at 9.097 kb on - strand, within GFF2429at 9.097 kb on - strand, within GFF2429at 9.127 kb on + strand, within GFF2429at 9.128 kb on - strand, within GFF2429

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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6,661 + GFF2427 0.12 +0.0
6,661 + GFF2427 0.12 +0.7
6,813 + GFF2427 0.27 +0.2
6,985 - GFF2427 0.44 -0.2
7,093 + GFF2427 0.54 +0.2
7,093 + GFF2427 0.54 +0.3
7,093 + GFF2427 0.54 -0.3
7,093 + GFF2427 0.54 +0.2
7,094 - GFF2427 0.54 +1.1
7,153 + GFF2427 0.60 -0.1
7,154 - GFF2427 0.60 +0.2
7,226 - GFF2427 0.67 -0.6
7,240 + GFF2427 0.68 -0.0
7,240 + GFF2427 0.68 +0.9
7,240 + GFF2427 0.68 -3.5
7,240 + GFF2427 0.68 -2.0
7,240 + GFF2427 0.68 -0.0
7,240 + GFF2427 0.68 +0.0
7,240 + GFF2427 0.68 +0.2
7,241 - GFF2427 0.69 +3.2
7,241 - GFF2427 0.69 +0.7
7,241 - GFF2427 0.69 -0.8
7,241 - GFF2427 0.69 -1.4
7,264 + GFF2427 0.71 -3.4
7,264 + GFF2427 0.71 -0.2
7,264 + GFF2427 0.71 -0.2
7,264 + GFF2427 0.71 +1.1
7,264 + GFF2427 0.71 +0.2
7,264 + GFF2427 0.71 -0.3
7,264 + GFF2427 0.71 -1.6
7,264 + GFF2427 0.71 +0.1
7,265 - GFF2427 0.71 -0.6
7,265 - GFF2427 0.71 +0.6
7,265 - GFF2427 0.71 -0.4
7,265 - GFF2427 0.71 -0.1
7,265 - GFF2427 0.71 -1.0
7,265 - GFF2427 0.71 +0.9
7,265 - GFF2427 0.71 +0.7
7,498 + +0.1
7,498 + +0.4
7,498 + -0.2
7,499 - -0.3
7,565 - +0.9
7,565 - +0.5
7,605 + -0.0
7,965 + GFF2428 0.66 +0.2
7,965 + GFF2428 0.66 +1.7
7,965 + GFF2428 0.66 +0.7
7,965 + GFF2428 0.66 +0.1
8,153 + -0.4
8,154 - -1.1
8,154 - -0.3
8,197 + +0.4
8,198 - +0.1
8,222 + -0.1
8,223 - -0.1
8,344 + GFF2429 0.14 +0.2
8,345 - GFF2429 0.15 +0.1
8,345 - GFF2429 0.15 +0.6
8,441 + GFF2429 0.22 +0.2
8,442 - GFF2429 0.22 +0.2
8,442 - GFF2429 0.22 +0.9
8,526 + GFF2429 0.29 -0.5
8,526 + GFF2429 0.29 +1.1
8,526 + GFF2429 0.29 +0.1
8,526 + GFF2429 0.29 -0.6
8,526 + GFF2429 0.29 -0.2
8,527 - GFF2429 0.29 +0.3
8,527 - GFF2429 0.29 -0.2
8,527 - GFF2429 0.29 +1.0
8,527 - GFF2429 0.29 +0.2
8,527 - GFF2429 0.29 -0.5
8,530 + GFF2429 0.29 +0.6
8,530 + GFF2429 0.29 -0.6
8,530 + GFF2429 0.29 +1.8
8,530 + GFF2429 0.29 +0.2
8,530 + GFF2429 0.29 +0.6
8,530 + GFF2429 0.29 -0.3
8,530 + GFF2429 0.29 +1.2
8,530 + GFF2429 0.29 -0.4
8,531 - GFF2429 0.29 -0.0
8,531 - GFF2429 0.29 -0.9
8,531 - GFF2429 0.29 +0.3
8,531 - GFF2429 0.29 -1.0
8,531 - GFF2429 0.29 -0.2
8,531 - GFF2429 0.29 -0.6
8,531 - GFF2429 0.29 -0.1
8,531 - GFF2429 0.29 +0.6
8,531 - GFF2429 0.29 -0.1
8,531 - GFF2429 0.29 +0.5
8,531 - GFF2429 0.29 -0.3
8,531 - GFF2429 0.29 +0.6
8,531 - GFF2429 0.29 -0.2
8,531 - GFF2429 0.29 +0.1
8,531 - GFF2429 0.29 -0.1
8,531 - GFF2429 0.29 -0.1
8,531 - GFF2429 0.29 +0.5
8,531 - GFF2429 0.29 +0.9
8,808 + GFF2429 0.51 +0.5
8,897 + GFF2429 0.58 -1.0
8,897 + GFF2429 0.58 -0.1
8,897 + GFF2429 0.58 -1.3
8,897 + GFF2429 0.58 +0.2
8,898 - GFF2429 0.58 +0.5
8,898 - GFF2429 0.58 +0.4
8,898 - GFF2429 0.58 +1.0
8,898 - GFF2429 0.58 +0.4
8,898 - GFF2429 0.58 +0.5
8,925 - GFF2429 0.60 -0.3
9,052 + GFF2429 0.70 -0.1
9,053 - GFF2429 0.70 +0.0
9,053 - GFF2429 0.70 -1.8
9,053 - GFF2429 0.70 +0.4
9,053 - GFF2429 0.70 -0.1
9,097 - GFF2429 0.73 +0.7
9,097 - GFF2429 0.73 -0.4
9,127 + GFF2429 0.76 -0.4
9,128 - GFF2429 0.76 -0.3

Or see this region's nucleotide sequence