Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2410

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2409 and GFF2410 are separated by 29 nucleotidesGFF2410 and GFF2411 are separated by 65 nucleotides GFF2409 - Sensor protein, at 55,758 to 57,071 GFF2409 GFF2410 - Two-component system response regulator QseB, at 57,101 to 57,871 GFF2410 GFF2411 - Phosphoglycerol transferase I (EC 2.7.8.20), at 57,937 to 59,697 GFF2411 Position (kb) 57 58Strain fitness (log2 ratio) -2 -1 0 1at 56.864 kb on - strand, within GFF2409at 57.062 kb on - strandat 57.258 kb on + strand, within GFF2410at 57.502 kb on - strand, within GFF2410at 57.898 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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56,864 - GFF2409 0.84 +1.7
57,062 - -0.1
57,258 + GFF2410 0.20 +0.6
57,502 - GFF2410 0.52 +1.7
57,898 + -2.6

Or see this region's nucleotide sequence