Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2380 and GFF2381 are separated by 29 nucleotides GFF2381 and GFF2382 are separated by 41 nucleotides GFF2382 and GFF2383 are separated by 701 nucleotides
GFF2380 - Alkaline phosphatase (EC 3.1.3.1), at 22,382 to 24,016
GFF2380
GFF2381 - hypothetical protein, at 24,046 to 24,363
GFF2381
GFF2382 - MSHA biogenesis protein MshM, at 24,405 to 25,313
GFF2382
GFF2383 - MSHA biogenesis protein MshN, at 26,015 to 26,599
GFF2383
Position (kb) 24
25
26 Strain fitness (log2 ratio) -1
0
1 at 23.405 kb on + strand, within GFF2380 at 23.405 kb on + strand, within GFF2380 at 23.406 kb on - strand, within GFF2380 at 23.441 kb on + strand, within GFF2380 at 23.441 kb on + strand, within GFF2380 at 23.442 kb on - strand, within GFF2380 at 23.516 kb on + strand, within GFF2380 at 23.580 kb on + strand, within GFF2380 at 23.786 kb on + strand, within GFF2380 at 23.861 kb on + strand at 23.862 kb on - strand at 23.912 kb on + strand at 23.912 kb on + strand at 23.912 kb on + strand at 23.939 kb on + strand at 23.940 kb on - strand at 24.066 kb on + strand at 24.066 kb on + strand at 24.408 kb on + strand at 24.408 kb on + strand at 24.409 kb on - strand at 24.409 kb on - strand at 24.409 kb on - strand at 24.413 kb on - strand at 24.413 kb on - strand at 24.615 kb on + strand, within GFF2382 at 24.627 kb on + strand, within GFF2382 at 24.627 kb on + strand, within GFF2382 at 24.628 kb on - strand, within GFF2382 at 24.642 kb on + strand, within GFF2382 at 24.643 kb on - strand, within GFF2382 at 24.757 kb on + strand, within GFF2382 at 24.757 kb on + strand, within GFF2382 at 24.757 kb on + strand, within GFF2382 at 24.757 kb on + strand, within GFF2382 at 24.959 kb on + strand, within GFF2382 at 24.969 kb on + strand, within GFF2382 at 25.005 kb on + strand, within GFF2382 at 25.006 kb on - strand, within GFF2382 at 25.008 kb on + strand, within GFF2382 at 25.008 kb on + strand, within GFF2382 at 25.008 kb on + strand, within GFF2382 at 25.008 kb on + strand, within GFF2382 at 25.025 kb on - strand, within GFF2382 at 25.150 kb on - strand, within GFF2382 at 25.433 kb on - strand at 25.855 kb on + strand at 25.855 kb on + strand at 25.856 kb on - strand at 25.893 kb on + strand at 26.014 kb on + strand at 26.015 kb on - strand at 26.015 kb on - strand at 26.240 kb on + strand, within GFF2383 at 26.240 kb on + strand, within GFF2383 at 26.241 kb on - strand, within GFF2383
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 23,405 + GFF2380 0.63 +0.6 23,405 + GFF2380 0.63 -0.5 23,406 - GFF2380 0.63 -0.8 23,441 + GFF2380 0.65 -0.9 23,441 + GFF2380 0.65 -0.3 23,442 - GFF2380 0.65 -0.3 23,516 + GFF2380 0.69 -0.3 23,580 + GFF2380 0.73 +1.5 23,786 + GFF2380 0.86 -0.6 23,861 + -0.1 23,862 - -0.3 23,912 + -0.2 23,912 + +0.4 23,912 + +0.3 23,939 + +0.5 23,940 - -0.3 24,066 + +0.2 24,066 + +0.3 24,408 + +0.3 24,408 + +0.1 24,409 - -0.1 24,409 - -0.3 24,409 - -0.5 24,413 - +0.2 24,413 - +0.2 24,615 + GFF2382 0.23 +0.2 24,627 + GFF2382 0.24 -1.7 24,627 + GFF2382 0.24 -0.7 24,628 - GFF2382 0.25 +0.5 24,642 + GFF2382 0.26 +0.2 24,643 - GFF2382 0.26 -0.5 24,757 + GFF2382 0.39 +0.0 24,757 + GFF2382 0.39 -0.2 24,757 + GFF2382 0.39 -0.2 24,757 + GFF2382 0.39 +0.1 24,959 + GFF2382 0.61 +0.2 24,969 + GFF2382 0.62 -0.1 25,005 + GFF2382 0.66 -0.2 25,006 - GFF2382 0.66 +0.1 25,008 + GFF2382 0.66 -0.1 25,008 + GFF2382 0.66 +0.4 25,008 + GFF2382 0.66 -0.1 25,008 + GFF2382 0.66 -1.3 25,025 - GFF2382 0.68 +0.3 25,150 - GFF2382 0.82 -1.3 25,433 - -1.3 25,855 + +0.3 25,855 + +0.8 25,856 - -0.0 25,893 + -0.4 26,014 + +0.4 26,015 - +0.3 26,015 - +0.8 26,240 + GFF2383 0.38 +1.1 26,240 + GFF2383 0.38 -0.4 26,241 - GFF2383 0.39 +0.2
Or see this region's nucleotide sequence