Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2375

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
15,590	-		GFF2374	0.55	+0.2
15,590	-		GFF2374	0.55	-2.3
15,777	+		GFF2374	0.64	+0.2
15,777	+		GFF2374	0.64	+0.5
15,777	+		GFF2374	0.64	+0.1
15,778	-		GFF2374	0.64	-0.5
15,900	+		GFF2374	0.69	+1.0
15,900	+		GFF2374	0.69	-0.2
15,901	-		GFF2374	0.69	-0.1
15,943	+		GFF2374	0.71	-0.6
15,943	+		GFF2374	0.71	-0.2
15,943	+		GFF2374	0.71	-2.7
15,943	+		GFF2374	0.71	-0.3
15,943	+		GFF2374	0.71	-0.3
15,944	-		GFF2374	0.71	+0.1
15,944	-		GFF2374	0.71	-0.1
15,985	-		GFF2374	0.73	-1.1
15,985	-		GFF2374	0.73	-0.7
16,199	+		GFF2374	0.83	-0.9
16,199	+		GFF2374	0.83	+0.7
16,200	-		GFF2374	0.83	+0.2
16,561	-				+0.6
16,587	+				+0.3
16,587	+				+1.5
16,588	-				+0.5
16,979	+		GFF2375	0.34	+0.0
16,979	+		GFF2375	0.34	-0.3
16,980	-		GFF2375	0.34	-2.9
17,148	+		GFF2375	0.48	+0.5
17,201	+		GFF2375	0.53	-0.3
17,201	+		GFF2375	0.53	-0.1
17,201	+		GFF2375	0.53	+0.1
17,201	+		GFF2375	0.53	-2.9
17,201	+		GFF2375	0.53	-0.6
17,202	-		GFF2375	0.53	-0.2
17,202	-		GFF2375	0.53	-0.2
17,202	-		GFF2375	0.53	-0.1
17,364	+		GFF2375	0.66	-0.4
17,492	+		GFF2375	0.77	-0.0
17,493	-		GFF2375	0.77	-0.4
17,498	+		GFF2375	0.78	+0.5
17,498	+		GFF2375	0.78	-0.1
17,498	+		GFF2375	0.78	+0.6
17,499	-		GFF2375	0.78	+0.2
17,499	-		GFF2375	0.78	-0.0
17,507	+		GFF2375	0.78	+0.4
17,507	+		GFF2375	0.78	-0.1
17,507	+		GFF2375	0.78	-0.3
17,508	-		GFF2375	0.78	+0.2
17,508	-		GFF2375	0.78	+0.1
17,508	-		GFF2375	0.78	+0.2
17,589	-		GFF2375	0.85	-0.5
17,589	-		GFF2375	0.85	+0.3
17,646	+				-1.2
17,647	-				+0.3
17,647	-				-0.7
17,647	-				-0.2
17,647	-				+0.1
17,711	+				+0.2
17,711	+				+0.1
17,711	+				-1.9
17,916	+				+0.1
17,963	+				-0.9
17,964	-				+0.1
17,964	-				+0.6
18,103	+				-1.5
18,103	+				+0.5
18,103	+				+0.3
18,440	+				-0.2
18,440	+				-0.3
18,441	-				-1.2
18,441	-				+0.5
18,441	-				-0.5
18,483	+				-0.0
18,483	+				-0.1
18,483	+				+0.0
18,483	+				+0.2
18,483	+				-1.2
18,483	+				-0.5
18,484	-				-0.4
18,484	-				+0.3
18,684	+				+1.6
18,755	+				+1.0