Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2236

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,120,555	+				+0.1
1,120,555	+				-0.8
1,120,555	+				-1.1
1,120,555	+				+0.9
1,120,555	+				-0.4
1,120,555	+				-0.1
1,120,555	+				-0.8
1,120,556	-				-0.1
1,120,556	-				-1.6
1,120,556	-				+0.3
1,120,556	-				-0.4
1,120,574	+				-0.5
1,120,574	+				-0.4
1,120,574	+				+1.3
1,120,574	+				-0.1
1,120,574	+				-0.1
1,120,575	-				+0.0
1,120,575	-				-0.1
1,120,575	-				+0.0
1,120,575	-				-0.2
1,120,603	+				+0.4
1,120,603	+				-0.6
1,120,603	+				+0.1
1,120,603	+				-1.4
1,120,603	+				+1.4
1,120,603	+				-0.4
1,120,603	+				+0.5
1,120,603	+				-0.1
1,120,604	-				+0.2
1,120,604	-				+0.5
1,120,604	-				+0.6
1,120,604	-				-0.4
1,120,604	-				+0.4
1,120,604	-				-0.6
1,120,617	+				+1.0
1,120,617	+				+0.3
1,120,617	+				+0.1
1,120,618	-				-0.1
1,120,618	-				-0.3
1,120,618	-				-0.3
1,120,619	+				+0.4
1,120,619	+				-0.5
1,120,619	+				-0.4
1,120,619	+				+0.0
1,120,619	+				+0.3
1,120,619	+				+0.2
1,120,619	+				+0.0
1,120,619	+				-1.1
1,120,619	+				-0.1
1,120,619	+				-1.3
1,120,619	+				+0.5
1,120,619	+				-0.4
1,120,619	+				-0.4
1,120,619	+				-0.7
1,120,619	+				-0.3
1,120,619	+				+0.6
1,120,619	+				-0.4
1,120,619	+				-1.6
1,120,619	+				-0.0
1,120,619	+				-0.1
1,120,620	-				+0.0
1,120,620	-				-0.2
1,120,620	-				+1.4
1,120,620	-				-0.5
1,120,620	-				+0.6
1,120,620	-				-0.2
1,120,620	-				-0.2
1,120,620	-				+0.0
1,120,620	-				-0.4
1,120,620	-				+0.9
1,120,620	-				-1.4
1,120,633	+				+0.2
1,120,634	-				-0.7
1,120,674	+				+0.8
1,120,674	+				+0.8
1,120,674	+				-0.8
1,120,674	+				+0.3
1,120,674	+				+1.4
1,120,674	+				+0.9
1,120,674	+				-0.8
1,120,675	-				+0.5
1,120,675	-				+0.0
1,120,675	-				-0.4
1,120,675	-				-0.8
1,120,675	-				-0.1
1,120,675	-				+0.1
1,120,675	-				-0.3
1,120,675	-				-0.6
1,120,675	-				-0.9
1,120,686	-				-1.9
1,120,686	-				-1.1
1,120,686	-				-0.4
1,120,711	+				-2.0
1,120,712	-				+0.3
1,120,778	+				-0.3
1,120,778	+				-0.6
1,120,778	+				+1.1
1,120,778	+				-0.1
1,120,778	+				-0.5
1,120,778	+				-1.4
1,120,778	+				-0.8
1,120,778	+				-0.4
1,120,778	+				+0.0
1,120,778	+				-0.7
1,120,778	+				+1.6
1,120,778	+				+0.4
1,120,779	-				+0.1
1,120,779	-				+0.2
1,120,779	-				-0.7
1,120,779	-				+1.2
1,120,779	-				-1.9
1,120,779	-				+0.6
1,120,779	-				-0.6
1,120,779	-				+0.1
1,120,779	-				+0.2
1,120,779	-				+0.3
1,120,779	-				+0.4
1,120,790	+				+1.1
1,120,837	+				-0.6
1,120,837	+				+0.3
1,120,837	+				+0.4
1,120,838	-				-0.2
1,120,838	-				+0.5
1,120,947	+				-0.2
1,120,947	+				+0.8
1,120,947	+				+0.1
1,120,947	+				-0.7
1,120,947	+				-0.6
1,120,947	+				+0.4
1,120,947	+				-1.3
1,120,947	+				-0.4
1,120,947	+				-1.1
1,120,948	-				-0.7
1,121,037	+		GFF2235	0.11	-1.0
1,121,037	+		GFF2235	0.11	-0.1
1,121,037	+		GFF2235	0.11	-0.3
1,121,358	-		GFF2235	0.86	+1.4
1,121,416	-				-0.3
1,121,578	+		GFF2236	0.16	-0.5
1,121,578	+		GFF2236	0.16	+0.5
1,121,578	+		GFF2236	0.16	+0.1
1,121,578	+		GFF2236	0.16	+0.8
1,121,579	-		GFF2236	0.16	+0.2
1,121,659	+		GFF2236	0.24	-0.1
1,121,659	+		GFF2236	0.24	-1.3
1,121,674	+		GFF2236	0.26	+0.0
1,121,764	+		GFF2236	0.35	+0.4
1,121,765	-		GFF2236	0.36	+0.1
1,121,765	-		GFF2236	0.36	-0.7
1,121,765	-		GFF2236	0.36	+0.3
1,122,013	+		GFF2236	0.62	-0.7
1,122,013	+		GFF2236	0.62	-0.7
1,122,013	+		GFF2236	0.62	-0.2
1,122,013	+		GFF2236	0.62	-0.5
1,122,013	+		GFF2236	0.62	-0.2
1,122,013	+		GFF2236	0.62	-0.0
1,122,013	+		GFF2236	0.62	-0.2
1,122,014	-		GFF2236	0.62	-0.3
1,122,014	-		GFF2236	0.62	+1.1
1,122,014	-		GFF2236	0.62	+0.8
1,122,014	-		GFF2236	0.62	+0.3
1,122,184	+		GFF2236	0.80	-0.3
1,122,184	+		GFF2236	0.80	-0.4
1,122,184	+		GFF2236	0.80	-0.2
1,122,185	-		GFF2236	0.80	+0.0
1,122,467	+				+0.4
1,122,468	-				+0.2
1,122,509	+		GFF2237	0.11	+0.1
1,122,548	+		GFF2237	0.21	+0.2
1,122,561	-		GFF2237	0.25	+0.8
1,122,563	+		GFF2237	0.25	-0.4
1,122,563	+		GFF2237	0.25	-0.1
1,122,564	-		GFF2237	0.25	+0.9
1,122,564	-		GFF2237	0.25	+1.0
1,122,564	-		GFF2237	0.25	+0.0
1,122,614	+		GFF2237	0.38	-0.4
1,122,614	+		GFF2237	0.38	-0.3
1,122,614	+		GFF2237	0.38	-0.2
1,122,614	+		GFF2237	0.38	+0.3
1,122,614	+		GFF2237	0.38	+1.6
1,122,614	+		GFF2237	0.38	+0.8
1,122,614	+		GFF2237	0.38	+0.4
1,122,615	-		GFF2237	0.39	+0.8
1,122,615	-		GFF2237	0.39	-1.0
1,122,615	-		GFF2237	0.39	+0.5
1,122,615	-		GFF2237	0.39	-0.3
1,122,615	-		GFF2237	0.39	-0.6
1,122,615	-		GFF2237	0.39	+1.1
1,122,615	-		GFF2237	0.39	+0.2
1,122,615	-		GFF2237	0.39	-0.9
1,122,753	-		GFF2237	0.74	+0.1
1,122,942	+				+0.1
1,122,978	+		GFF2238	0.14	+0.3
1,122,979	-		GFF2238	0.14	-1.1
1,122,996	+		GFF2238	0.16	-0.0
1,122,996	+		GFF2238	0.16	-0.1
1,122,996	+		GFF2238	0.16	+0.3
1,122,996	+		GFF2238	0.16	-0.5
1,122,996	+		GFF2238	0.16	+0.2
1,122,997	-		GFF2238	0.16	+0.0
1,122,997	-		GFF2238	0.16	+0.1
1,122,997	-		GFF2238	0.16	-0.1
1,123,005	+		GFF2238	0.17	+0.0
1,123,005	+		GFF2238	0.17	-0.4
1,123,005	+		GFF2238	0.17	-0.4
1,123,005	+		GFF2238	0.17	+0.3
1,123,005	+		GFF2238	0.17	-0.5
1,123,006	-		GFF2238	0.17	-0.2
1,123,006	-		GFF2238	0.17	-0.9
1,123,053	+		GFF2238	0.23	+0.2
1,123,054	-		GFF2238	0.23	-0.1
1,123,146	+		GFF2238	0.35	+0.1
1,123,147	-		GFF2238	0.35	-0.2
1,123,320	+		GFF2238	0.57	-1.0
1,123,320	+		GFF2238	0.57	+0.5
1,123,321	-		GFF2238	0.58	+0.2
1,123,321	-		GFF2238	0.58	-0.5
1,123,321	-		GFF2238	0.58	-0.9
1,123,321	-		GFF2238	0.58	-0.1