Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2176

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,068,356	+				+1.0
1,068,357	-				-0.2
1,068,357	-				+0.5
1,068,357	-				-0.5
1,068,438	-				+0.5
1,068,447	+				+0.1
1,068,717	+		GFF2175	0.33	+0.6
1,068,717	+		GFF2175	0.33	+1.2
1,068,717	+		GFF2175	0.33	+0.5
1,068,718	-		GFF2175	0.33	+0.5
1,068,718	-		GFF2175	0.33	+0.5
1,068,718	-		GFF2175	0.33	+0.0
1,068,874	-		GFF2175	0.51	+0.3
1,068,874	-		GFF2175	0.51	-2.1
1,068,874	-		GFF2175	0.51	-0.2
1,069,114	-		GFF2175	0.79	-0.9
1,069,114	-		GFF2175	0.79	-0.0
1,069,114	-		GFF2175	0.79	+0.3
1,069,227	+				-0.0
1,069,968	-		GFF2176	0.63	+1.6
1,070,132	+		GFF2176	0.79	+0.1
1,070,132	+		GFF2176	0.79	+1.1
1,070,425	-				-0.1
1,070,806	-		GFF2177	0.42	-1.0
1,070,806	-		GFF2177	0.42	-0.3
1,070,806	-		GFF2177	0.42	-1.1
1,070,892	+		GFF2177	0.51	+0.5
1,070,893	-		GFF2177	0.51	+2.0
1,070,949	+		GFF2177	0.57	+1.0
1,070,949	+		GFF2177	0.57	-0.8
1,070,949	+		GFF2177	0.57	+0.7
1,070,950	-		GFF2177	0.57	-0.2
1,071,096	+		GFF2177	0.71	+0.8
1,071,280	-		GFF2177	0.90	-0.5