Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2118

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,006,053	+				-2.0
1,006,054	-				+1.0
1,006,323	+		GFF2117	0.32	-0.2
1,006,323	+		GFF2117	0.32	+0.6
1,006,347	+		GFF2117	0.35	-1.4
1,006,347	+		GFF2117	0.35	+0.1
1,006,657	-		GFF2117	0.71	-0.3
1,006,666	-		GFF2117	0.72	+0.1
1,006,719	+		GFF2117	0.78	+0.5
1,006,719	+		GFF2117	0.78	+0.3
1,006,719	+		GFF2117	0.78	+0.0
1,006,719	+		GFF2117	0.78	-0.1
1,006,719	+		GFF2117	0.78	+0.0
1,006,831	-				+0.4
1,006,831	-				+2.0
1,006,869	+				+0.2
1,006,869	+				-0.9
1,006,870	-				+0.9
1,007,285	-		GFF2118	0.15	-0.3
1,007,339	+		GFF2118	0.17	-0.9
1,007,687	+		GFF2118	0.33	+1.0
1,007,687	+		GFF2118	0.33	-0.1
1,007,688	-		GFF2118	0.33	+1.1
1,007,730	+		GFF2118	0.34	-1.2
1,007,731	-		GFF2118	0.35	+0.0
1,007,731	-		GFF2118	0.35	-0.4
1,007,861	+		GFF2118	0.40	+0.1
1,007,861	+		GFF2118	0.40	-0.3
1,007,861	+		GFF2118	0.40	-0.2
1,007,862	-		GFF2118	0.40	-0.9
1,007,862	-		GFF2118	0.40	-0.0
1,008,269	+		GFF2118	0.58	-0.1
1,008,509	+		GFF2118	0.69	+0.1
1,008,510	-		GFF2118	0.69	-0.5
1,008,510	-		GFF2118	0.69	-0.0
1,008,620	+		GFF2118	0.74	-0.4
1,008,840	+		GFF2118	0.84	-0.1
1,008,840	+		GFF2118	0.84	-0.4
1,008,840	+		GFF2118	0.84	-0.4
1,008,840	+		GFF2118	0.84	+0.4
1,008,841	-		GFF2118	0.84	+0.2
1,008,841	-		GFF2118	0.84	-1.2
1,008,841	-		GFF2118	0.84	-2.4
1,009,022	+				+0.2
1,009,341	+				+0.9
1,009,341	+				-0.9
1,009,342	-				-0.1
1,009,499	+		GFF2119	0.19	+0.9
1,009,499	+		GFF2119	0.19	-0.3
1,009,499	+		GFF2119	0.19	-0.5
1,009,499	+		GFF2119	0.19	-0.1
1,009,499	+		GFF2119	0.19	-0.1
1,009,499	+		GFF2119	0.19	+0.2
1,009,500	-		GFF2119	0.19	+0.3
1,009,500	-		GFF2119	0.19	-0.9
1,009,500	-		GFF2119	0.19	-0.3
1,009,500	-		GFF2119	0.19	+1.4
1,009,579	+		GFF2119	0.31	-0.0
1,009,580	-		GFF2119	0.32	-0.5
1,009,580	-		GFF2119	0.32	-0.1
1,009,761	-		GFF2119	0.59	-1.7
1,009,913	+		GFF2119	0.82	+1.4
1,009,913	+		GFF2119	0.82	-1.2
1,010,134	+				+0.1