Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF207 and GFF208 are separated by 86 nucleotides GFF208 and GFF209 are separated by 69 nucleotides
GFF207 - Nucleoside ABC transporter, permease protein 2, at 224,544 to 225,464
GFF207
GFF208 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 225,551 to 226,669
GFF208
GFF209 - Hypothetical protein with Rieske (2Fe-2S) region, at 226,739 to 227,761
GFF209
Position (kb) 225
226
227 Strain fitness (log2 ratio) -1
0
1
2 at 224.808 kb on + strand, within GFF207 at 224.871 kb on + strand, within GFF207 at 224.872 kb on - strand, within GFF207 at 224.872 kb on - strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 225.153 kb on + strand, within GFF207 at 225.153 kb on + strand, within GFF207 at 225.153 kb on + strand, within GFF207 at 225.273 kb on + strand, within GFF207 at 225.274 kb on - strand, within GFF207 at 225.360 kb on + strand, within GFF207 at 225.361 kb on - strand, within GFF207 at 225.361 kb on - strand, within GFF207 at 225.361 kb on - strand, within GFF207 at 225.462 kb on + strand at 225.463 kb on - strand at 225.692 kb on + strand, within GFF208 at 225.884 kb on + strand, within GFF208 at 225.950 kb on + strand, within GFF208 at 225.977 kb on + strand, within GFF208 at 225.977 kb on + strand, within GFF208 at 225.977 kb on + strand, within GFF208 at 225.992 kb on + strand, within GFF208 at 225.992 kb on + strand, within GFF208 at 226.004 kb on + strand, within GFF208 at 226.004 kb on + strand, within GFF208 at 226.004 kb on + strand, within GFF208 at 226.319 kb on + strand, within GFF208 at 226.320 kb on - strand, within GFF208 at 226.368 kb on - strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.370 kb on + strand, within GFF208 at 226.371 kb on - strand, within GFF208 at 226.371 kb on - strand, within GFF208 at 226.634 kb on + strand at 226.634 kb on + strand at 226.635 kb on - strand at 226.635 kb on - strand at 226.961 kb on + strand, within GFF209 at 226.962 kb on - strand, within GFF209 at 227.379 kb on - strand, within GFF209 at 227.418 kb on - strand, within GFF209
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 224,808 + GFF207 0.29 +0.5 224,871 + GFF207 0.36 +1.5 224,872 - GFF207 0.36 +0.8 224,872 - GFF207 0.36 +0.2 224,973 + GFF207 0.47 +1.2 224,973 + GFF207 0.47 +1.0 224,973 + GFF207 0.47 +2.1 224,973 + GFF207 0.47 +0.7 224,974 - GFF207 0.47 +1.1 224,974 - GFF207 0.47 +1.1 224,974 - GFF207 0.47 +1.4 224,974 - GFF207 0.47 +0.8 224,974 - GFF207 0.47 +0.7 225,153 + GFF207 0.66 +0.9 225,153 + GFF207 0.66 +0.6 225,153 + GFF207 0.66 +0.9 225,273 + GFF207 0.79 -1.4 225,274 - GFF207 0.79 +0.7 225,360 + GFF207 0.89 +0.7 225,361 - GFF207 0.89 +1.3 225,361 - GFF207 0.89 +0.6 225,361 - GFF207 0.89 +0.3 225,462 + +1.6 225,463 - +1.9 225,692 + GFF208 0.13 +0.3 225,884 + GFF208 0.30 +0.7 225,950 + GFF208 0.36 +0.5 225,977 + GFF208 0.38 +1.6 225,977 + GFF208 0.38 -1.6 225,977 + GFF208 0.38 +0.1 225,992 + GFF208 0.39 +0.8 225,992 + GFF208 0.39 +0.7 226,004 + GFF208 0.40 +1.1 226,004 + GFF208 0.40 +1.0 226,004 + GFF208 0.40 +0.2 226,319 + GFF208 0.69 +0.9 226,320 - GFF208 0.69 +1.8 226,368 - GFF208 0.73 +0.9 226,370 + GFF208 0.73 +0.5 226,370 + GFF208 0.73 +1.7 226,370 + GFF208 0.73 +0.6 226,370 + GFF208 0.73 +1.7 226,370 + GFF208 0.73 +0.9 226,371 - GFF208 0.73 +1.4 226,371 - GFF208 0.73 +0.9 226,634 + +1.1 226,634 + +1.1 226,635 - +0.9 226,635 - +1.3 226,961 + GFF209 0.22 +0.9 226,962 - GFF209 0.22 -0.0 227,379 - GFF209 0.63 +0.0 227,418 - GFF209 0.66 +0.3
Or see this region's nucleotide sequence