Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2066 and GFF2067 are separated by 58 nucleotides GFF2067 and GFF2068 are separated by 240 nucleotides GFF2068 and GFF2069 are separated by 48 nucleotides
GFF2066 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 948,247 to 951,735
GFF2066
GFF2067 - hypothetical protein, at 951,794 to 952,081
GFF2067
GFF2068 - Regulatory protein, LuxR:Tetratricopeptide TPR_4, at 952,322 to 955,021
GFF2068
GFF2069 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 955,070 to 956,254
GFF2069
Position (kb) 952
953
954
955
956 Strain fitness (log2 ratio) -2
-1
0
1 at 951.434 kb on + strand at 951.434 kb on + strand at 951.435 kb on - strand at 951.566 kb on + strand at 951.567 kb on - strand at 951.578 kb on + strand at 951.579 kb on - strand at 951.579 kb on - strand at 951.579 kb on - strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.687 kb on - strand at 951.687 kb on - strand at 951.847 kb on - strand, within GFF2067 at 951.897 kb on + strand, within GFF2067 at 951.898 kb on - strand, within GFF2067 at 952.132 kb on + strand at 952.197 kb on + strand at 952.197 kb on + strand at 952.198 kb on - strand at 952.272 kb on - strand at 952.577 kb on + strand at 953.093 kb on + strand, within GFF2068 at 953.423 kb on + strand, within GFF2068 at 953.423 kb on + strand, within GFF2068 at 953.424 kb on - strand, within GFF2068 at 953.424 kb on - strand, within GFF2068 at 953.424 kb on - strand, within GFF2068 at 953.424 kb on - strand, within GFF2068 at 953.576 kb on + strand, within GFF2068 at 953.576 kb on + strand, within GFF2068 at 953.577 kb on - strand, within GFF2068 at 953.912 kb on + strand, within GFF2068 at 953.912 kb on + strand, within GFF2068 at 953.912 kb on + strand, within GFF2068 at 953.912 kb on + strand, within GFF2068 at 953.913 kb on - strand, within GFF2068 at 954.053 kb on + strand, within GFF2068 at 954.054 kb on - strand, within GFF2068 at 954.054 kb on - strand, within GFF2068 at 954.054 kb on - strand, within GFF2068 at 954.054 kb on - strand, within GFF2068 at 954.113 kb on + strand, within GFF2068 at 954.240 kb on - strand, within GFF2068 at 954.740 kb on + strand, within GFF2068 at 954.878 kb on + strand at 954.878 kb on + strand at 954.879 kb on - strand at 955.045 kb on - strand at 955.154 kb on + strand at 955.155 kb on - strand at 955.155 kb on - strand at 955.337 kb on + strand, within GFF2069 at 955.338 kb on - strand, within GFF2069 at 955.402 kb on + strand, within GFF2069 at 955.403 kb on + strand, within GFF2069 at 955.404 kb on - strand, within GFF2069 at 955.556 kb on + strand, within GFF2069 at 955.595 kb on + strand, within GFF2069 at 955.596 kb on - strand, within GFF2069 at 955.658 kb on + strand, within GFF2069 at 955.841 kb on + strand, within GFF2069 at 955.910 kb on + strand, within GFF2069
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 951,434 + -1.0 951,434 + -0.1 951,435 - -1.2 951,566 + -1.7 951,567 - +0.1 951,578 + -0.3 951,579 - -0.7 951,579 - -0.0 951,579 - -0.1 951,686 + -0.3 951,686 + -0.9 951,686 + -0.1 951,686 + +0.8 951,686 + -0.1 951,687 - -0.1 951,687 - +0.2 951,847 - GFF2067 0.18 +0.6 951,897 + GFF2067 0.36 +0.5 951,898 - GFF2067 0.36 -0.2 952,132 + -0.1 952,197 + +0.1 952,197 + -0.2 952,198 - +0.3 952,272 - +0.3 952,577 + +1.1 953,093 + GFF2068 0.29 -1.2 953,423 + GFF2068 0.41 +0.6 953,423 + GFF2068 0.41 -0.0 953,424 - GFF2068 0.41 -0.9 953,424 - GFF2068 0.41 +1.0 953,424 - GFF2068 0.41 +0.9 953,424 - GFF2068 0.41 +0.1 953,576 + GFF2068 0.46 +0.7 953,576 + GFF2068 0.46 -0.1 953,577 - GFF2068 0.46 +0.1 953,912 + GFF2068 0.59 -1.0 953,912 + GFF2068 0.59 +0.0 953,912 + GFF2068 0.59 -1.8 953,912 + GFF2068 0.59 -1.7 953,913 - GFF2068 0.59 +0.1 954,053 + GFF2068 0.64 -0.1 954,054 - GFF2068 0.64 -0.4 954,054 - GFF2068 0.64 +0.2 954,054 - GFF2068 0.64 -0.7 954,054 - GFF2068 0.64 +0.2 954,113 + GFF2068 0.66 +0.1 954,240 - GFF2068 0.71 +0.1 954,740 + GFF2068 0.90 -0.0 954,878 + +0.6 954,878 + +1.3 954,879 - -0.7 955,045 - -0.1 955,154 + -0.8 955,155 - -0.2 955,155 - -0.1 955,337 + GFF2069 0.23 -0.7 955,338 - GFF2069 0.23 +0.4 955,402 + GFF2069 0.28 -0.1 955,403 + GFF2069 0.28 -0.1 955,404 - GFF2069 0.28 -0.3 955,556 + GFF2069 0.41 -0.1 955,595 + GFF2069 0.44 -0.2 955,596 - GFF2069 0.44 +0.1 955,658 + GFF2069 0.50 +0.1 955,841 + GFF2069 0.65 -0.1 955,910 + GFF2069 0.71 -1.6
Or see this region's nucleotide sequence