Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2017

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2015 and GFF2016 are separated by 11 nucleotidesGFF2016 and GFF2017 are separated by 61 nucleotidesGFF2017 and GFF2018 overlap by 4 nucleotides GFF2015 - Chromosome (plasmid) partitioning protein ParA, at 890,695 to 891,465 GFF2015 GFF2016 - Threonine efflux protein, at 891,477 to 892,091 GFF2016 GFF2017 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 892,153 to 892,827 GFF2017 GFF2018 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 892,824 to 894,791 GFF2018 Position (kb) 892 893Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 891.478 kb on + strandat 891.478 kb on + strandat 891.478 kb on + strandat 891.478 kb on + strandat 891.478 kb on + strandat 891.479 kb on - strandat 891.479 kb on - strandat 891.479 kb on - strandat 891.479 kb on - strandat 891.479 kb on - strandat 891.479 kb on - strandat 891.479 kb on - strandat 891.479 kb on - strandat 891.479 kb on - strandat 891.613 kb on + strand, within GFF2016at 891.613 kb on + strand, within GFF2016at 891.613 kb on + strand, within GFF2016at 891.613 kb on + strand, within GFF2016at 891.614 kb on - strand, within GFF2016at 891.614 kb on - strand, within GFF2016at 891.614 kb on - strand, within GFF2016at 891.614 kb on - strand, within GFF2016at 891.712 kb on + strand, within GFF2016at 891.712 kb on + strand, within GFF2016at 891.712 kb on + strand, within GFF2016at 891.712 kb on + strand, within GFF2016at 891.712 kb on + strand, within GFF2016at 891.712 kb on + strand, within GFF2016at 891.712 kb on + strand, within GFF2016at 891.713 kb on - strand, within GFF2016at 891.713 kb on - strand, within GFF2016at 891.713 kb on - strand, within GFF2016at 891.713 kb on - strand, within GFF2016at 891.713 kb on - strand, within GFF2016at 891.713 kb on - strand, within GFF2016at 891.713 kb on - strand, within GFF2016at 891.713 kb on - strand, within GFF2016at 891.766 kb on + strand, within GFF2016at 891.766 kb on + strand, within GFF2016at 891.766 kb on + strand, within GFF2016at 891.766 kb on + strand, within GFF2016at 891.767 kb on - strand, within GFF2016at 891.767 kb on - strand, within GFF2016at 891.767 kb on - strand, within GFF2016at 891.767 kb on - strand, within GFF2016at 891.767 kb on - strand, within GFF2016at 891.845 kb on - strand, within GFF2016at 891.845 kb on - strand, within GFF2016at 891.845 kb on - strand, within GFF2016at 891.845 kb on - strand, within GFF2016at 891.845 kb on - strand, within GFF2016at 891.845 kb on - strand, within GFF2016at 892.073 kb on - strandat 892.073 kb on - strandat 892.073 kb on - strandat 892.123 kb on + strandat 892.258 kb on - strand, within GFF2017at 892.397 kb on + strand, within GFF2017at 892.397 kb on + strand, within GFF2017at 892.397 kb on + strand, within GFF2017at 892.398 kb on - strand, within GFF2017at 892.398 kb on - strand, within GFF2017at 892.398 kb on - strand, within GFF2017at 892.706 kb on + strand, within GFF2017at 892.706 kb on + strand, within GFF2017at 892.706 kb on + strand, within GFF2017at 892.706 kb on + strand, within GFF2017at 892.707 kb on - strand, within GFF2017at 892.707 kb on - strand, within GFF2017at 892.707 kb on - strand, within GFF2017at 892.707 kb on - strand, within GFF2017at 892.707 kb on - strand, within GFF2017at 892.707 kb on - strand, within GFF2017at 892.707 kb on - strand, within GFF2017at 892.707 kb on - strand, within GFF2017at 892.739 kb on + strand, within GFF2017at 892.739 kb on + strand, within GFF2017at 892.739 kb on + strand, within GFF2017at 892.739 kb on + strand, within GFF2017at 892.739 kb on + strand, within GFF2017at 892.739 kb on + strand, within GFF2017at 892.740 kb on - strand, within GFF2017at 892.740 kb on - strand, within GFF2017at 892.740 kb on - strand, within GFF2017at 892.740 kb on - strand, within GFF2017at 893.008 kb on + strandat 893.009 kb on - strandat 893.041 kb on + strand, within GFF2018at 893.083 kb on + strand, within GFF2018at 893.084 kb on - strand, within GFF2018at 893.084 kb on - strand, within GFF2018at 893.084 kb on - strand, within GFF2018at 893.092 kb on + strand, within GFF2018at 893.093 kb on - strand, within GFF2018at 893.093 kb on - strand, within GFF2018at 893.173 kb on + strand, within GFF2018at 893.173 kb on + strand, within GFF2018at 893.174 kb on - strand, within GFF2018at 893.174 kb on - strand, within GFF2018at 893.206 kb on + strand, within GFF2018at 893.206 kb on + strand, within GFF2018at 893.206 kb on + strand, within GFF2018at 893.207 kb on - strand, within GFF2018at 893.207 kb on - strand, within GFF2018at 893.207 kb on - strand, within GFF2018at 893.540 kb on - strand, within GFF2018at 893.540 kb on - strand, within GFF2018at 893.540 kb on - strand, within GFF2018at 893.540 kb on - strand, within GFF2018at 893.540 kb on - strand, within GFF2018at 893.560 kb on - strand, within GFF2018at 893.635 kb on + strand, within GFF2018at 893.725 kb on + strand, within GFF2018at 893.725 kb on + strand, within GFF2018at 893.725 kb on + strand, within GFF2018at 893.726 kb on - strand, within GFF2018at 893.731 kb on + strand, within GFF2018at 893.732 kb on - strand, within GFF2018at 893.732 kb on - strand, within GFF2018at 893.743 kb on + strand, within GFF2018at 893.744 kb on - strand, within GFF2018

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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891,478 + -2.2
891,478 + +0.9
891,478 + +0.7
891,478 + +1.6
891,478 + -0.1
891,479 - +0.5
891,479 - -0.0
891,479 - +0.5
891,479 - -0.0
891,479 - -0.4
891,479 - +0.4
891,479 - +0.7
891,479 - -1.0
891,479 - +1.5
891,613 + GFF2016 0.22 -0.7
891,613 + GFF2016 0.22 -0.1
891,613 + GFF2016 0.22 +0.5
891,613 + GFF2016 0.22 +1.5
891,614 - GFF2016 0.22 -0.4
891,614 - GFF2016 0.22 -0.1
891,614 - GFF2016 0.22 -0.3
891,614 - GFF2016 0.22 +0.5
891,712 + GFF2016 0.38 -0.9
891,712 + GFF2016 0.38 +0.1
891,712 + GFF2016 0.38 +0.5
891,712 + GFF2016 0.38 +0.4
891,712 + GFF2016 0.38 +0.7
891,712 + GFF2016 0.38 -0.6
891,712 + GFF2016 0.38 -0.0
891,713 - GFF2016 0.38 +0.0
891,713 - GFF2016 0.38 -1.7
891,713 - GFF2016 0.38 +1.5
891,713 - GFF2016 0.38 -0.5
891,713 - GFF2016 0.38 +0.2
891,713 - GFF2016 0.38 +1.0
891,713 - GFF2016 0.38 +0.1
891,713 - GFF2016 0.38 +0.0
891,766 + GFF2016 0.47 +0.4
891,766 + GFF2016 0.47 +1.1
891,766 + GFF2016 0.47 +0.2
891,766 + GFF2016 0.47 +0.1
891,767 - GFF2016 0.47 -0.2
891,767 - GFF2016 0.47 -2.9
891,767 - GFF2016 0.47 -0.3
891,767 - GFF2016 0.47 +0.5
891,767 - GFF2016 0.47 -0.1
891,845 - GFF2016 0.60 -0.3
891,845 - GFF2016 0.60 +0.0
891,845 - GFF2016 0.60 -1.0
891,845 - GFF2016 0.60 -0.8
891,845 - GFF2016 0.60 +0.5
891,845 - GFF2016 0.60 -0.3
892,073 - +0.3
892,073 - -0.5
892,073 - -1.0
892,123 + +0.5
892,258 - GFF2017 0.16 +0.2
892,397 + GFF2017 0.36 +0.7
892,397 + GFF2017 0.36 +0.5
892,397 + GFF2017 0.36 +0.2
892,398 - GFF2017 0.36 +0.1
892,398 - GFF2017 0.36 +0.3
892,398 - GFF2017 0.36 +0.5
892,706 + GFF2017 0.82 +0.4
892,706 + GFF2017 0.82 +0.5
892,706 + GFF2017 0.82 -0.1
892,706 + GFF2017 0.82 +2.3
892,707 - GFF2017 0.82 +0.5
892,707 - GFF2017 0.82 +1.9
892,707 - GFF2017 0.82 +0.3
892,707 - GFF2017 0.82 +0.5
892,707 - GFF2017 0.82 +0.5
892,707 - GFF2017 0.82 +1.0
892,707 - GFF2017 0.82 +0.6
892,707 - GFF2017 0.82 +0.5
892,739 + GFF2017 0.87 +1.1
892,739 + GFF2017 0.87 +0.3
892,739 + GFF2017 0.87 -0.2
892,739 + GFF2017 0.87 +0.5
892,739 + GFF2017 0.87 +0.7
892,739 + GFF2017 0.87 -0.2
892,740 - GFF2017 0.87 +0.8
892,740 - GFF2017 0.87 +0.6
892,740 - GFF2017 0.87 +0.5
892,740 - GFF2017 0.87 +0.7
893,008 + +0.5
893,009 - +0.7
893,041 + GFF2018 0.11 +0.7
893,083 + GFF2018 0.13 -0.5
893,084 - GFF2018 0.13 -0.3
893,084 - GFF2018 0.13 -0.6
893,084 - GFF2018 0.13 +0.0
893,092 + GFF2018 0.14 -0.2
893,093 - GFF2018 0.14 +1.3
893,093 - GFF2018 0.14 +0.1
893,173 + GFF2018 0.18 -1.9
893,173 + GFF2018 0.18 -0.7
893,174 - GFF2018 0.18 +0.4
893,174 - GFF2018 0.18 +0.2
893,206 + GFF2018 0.19 +0.0
893,206 + GFF2018 0.19 +0.4
893,206 + GFF2018 0.19 +0.3
893,207 - GFF2018 0.19 +0.8
893,207 - GFF2018 0.19 +1.0
893,207 - GFF2018 0.19 +0.3
893,540 - GFF2018 0.36 +1.2
893,540 - GFF2018 0.36 +3.0
893,540 - GFF2018 0.36 -0.7
893,540 - GFF2018 0.36 +0.5
893,540 - GFF2018 0.36 +0.6
893,560 - GFF2018 0.37 -0.3
893,635 + GFF2018 0.41 +0.7
893,725 + GFF2018 0.46 +1.2
893,725 + GFF2018 0.46 +0.3
893,725 + GFF2018 0.46 -0.1
893,726 - GFF2018 0.46 +0.1
893,731 + GFF2018 0.46 +0.8
893,732 - GFF2018 0.46 -0.5
893,732 - GFF2018 0.46 -0.1
893,743 + GFF2018 0.47 -1.4
893,744 - GFF2018 0.47 -1.3

Or see this region's nucleotide sequence