Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2009 and GFF2010 overlap by 17 nucleotides GFF2010 and GFF2011 are separated by 304 nucleotides GFF2011 and GFF2012 are separated by 92 nucleotides
GFF2009 - Sensor histidine kinase, at 883,793 to 885,670
GFF2009
GFF2010 - DNA-binding response regulator, LuxR family, at 885,654 to 886,274
GFF2010
GFF2011 - glycoprotein/polysaccharide metabolism, at 886,579 to 887,388
GFF2011
GFF2012 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 887,481 to 889,037
GFF2012
Position (kb) 886
887
888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 885.655 kb on + strand at 885.656 kb on - strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.692 kb on - strand at 885.692 kb on - strand at 885.692 kb on - strand at 885.692 kb on - strand at 886.318 kb on + strand at 886.318 kb on + strand at 886.319 kb on - strand at 886.319 kb on - strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.392 kb on - strand at 886.445 kb on + strand at 886.445 kb on + strand at 886.446 kb on - strand at 886.446 kb on - strand at 886.446 kb on - strand at 886.446 kb on - strand at 886.446 kb on - strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.552 kb on - strand at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 887.012 kb on + strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.070 kb on + strand, within GFF2011 at 887.072 kb on + strand, within GFF2011 at 887.072 kb on + strand, within GFF2011 at 887.072 kb on + strand, within GFF2011 at 887.072 kb on + strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.274 kb on - strand, within GFF2011 at 887.274 kb on - strand, within GFF2011 at 887.274 kb on - strand, within GFF2011 at 887.801 kb on - strand, within GFF2012
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 885,655 + -0.5 885,656 - -0.3 885,691 + +1.0 885,691 + -0.3 885,691 + +1.5 885,691 + -0.1 885,691 + +0.8 885,691 + +0.5 885,692 - +0.9 885,692 - +0.0 885,692 - +0.1 885,692 - +0.8 886,318 + +1.3 886,318 + +0.1 886,319 - +0.1 886,319 - +0.2 886,391 + +1.0 886,391 + +0.2 886,392 - -0.5 886,445 + -0.3 886,445 + -0.1 886,446 - +0.6 886,446 - +0.7 886,446 - +0.1 886,446 - +2.8 886,446 - -0.3 886,510 + +0.4 886,510 + +0.6 886,510 + +0.6 886,510 + -0.2 886,510 + -0.2 886,510 + +0.1 886,510 + +1.5 886,510 + -0.2 886,510 + +0.7 886,510 + -0.9 886,510 + -0.4 886,511 - +0.2 886,511 - -1.3 886,511 - +0.5 886,511 - -1.1 886,511 - +0.3 886,511 - -0.1 886,511 - +0.4 886,511 - -0.3 886,511 - +0.5 886,511 - -0.6 886,511 - -0.2 886,511 - -1.8 886,511 - -0.3 886,511 - +0.2 886,552 - +0.2 886,781 + GFF2011 0.25 -0.1 886,781 + GFF2011 0.25 +0.1 886,781 + GFF2011 0.25 -0.1 886,781 + GFF2011 0.25 -0.7 886,781 + GFF2011 0.25 -0.1 886,781 + GFF2011 0.25 -1.5 886,781 + GFF2011 0.25 +0.2 886,782 - GFF2011 0.25 +0.1 886,782 - GFF2011 0.25 -0.3 886,782 - GFF2011 0.25 -0.2 886,782 - GFF2011 0.25 +0.1 886,782 - GFF2011 0.25 +0.4 886,782 - GFF2011 0.25 -0.0 886,782 - GFF2011 0.25 +1.3 886,782 - GFF2011 0.25 -1.1 886,782 - GFF2011 0.25 -0.1 886,782 - GFF2011 0.25 -0.3 886,782 - GFF2011 0.25 -1.2 887,012 + GFF2011 0.53 +0.6 887,013 - GFF2011 0.54 +0.2 887,013 - GFF2011 0.54 -1.1 887,013 - GFF2011 0.54 -0.3 887,013 - GFF2011 0.54 +0.6 887,013 - GFF2011 0.54 -0.1 887,030 + GFF2011 0.56 -0.7 887,030 + GFF2011 0.56 +0.1 887,030 + GFF2011 0.56 +0.1 887,030 + GFF2011 0.56 +0.1 887,030 + GFF2011 0.56 -0.2 887,030 + GFF2011 0.56 -0.4 887,030 + GFF2011 0.56 -0.0 887,031 - GFF2011 0.56 +0.2 887,031 - GFF2011 0.56 -1.9 887,031 - GFF2011 0.56 -0.7 887,031 - GFF2011 0.56 -0.3 887,031 - GFF2011 0.56 +0.8 887,031 - GFF2011 0.56 -0.5 887,031 - GFF2011 0.56 +0.9 887,031 - GFF2011 0.56 +0.8 887,031 - GFF2011 0.56 -0.3 887,070 + GFF2011 0.61 +0.5 887,072 + GFF2011 0.61 +0.2 887,072 + GFF2011 0.61 +0.5 887,072 + GFF2011 0.61 +0.1 887,072 + GFF2011 0.61 -0.5 887,073 - GFF2011 0.61 -0.7 887,073 - GFF2011 0.61 -0.3 887,073 - GFF2011 0.61 -1.7 887,073 - GFF2011 0.61 -0.0 887,073 - GFF2011 0.61 -0.7 887,073 - GFF2011 0.61 -3.0 887,273 + GFF2011 0.86 -0.7 887,273 + GFF2011 0.86 -0.3 887,273 + GFF2011 0.86 -0.8 887,273 + GFF2011 0.86 +0.5 887,273 + GFF2011 0.86 +0.5 887,274 - GFF2011 0.86 +0.0 887,274 - GFF2011 0.86 -0.4 887,274 - GFF2011 0.86 -0.7 887,801 - GFF2012 0.21 +0.3
Or see this region's nucleotide sequence