Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1989

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1988 and GFF1989 are separated by 101 nucleotidesGFF1989 and GFF1990 are separated by 168 nucleotides GFF1988 - Transcriptional regulator, LysR family, at 864,540 to 865,457 GFF1988 GFF1989 - Rrf2-linked NADH-flavin reductase, at 865,559 to 866,203 GFF1989 GFF1990 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 866,372 to 868,450 GFF1990 Position (kb) 865 866 867Strain fitness (log2 ratio) -1 0 1at 864.724 kb on + strand, within GFF1988at 864.724 kb on + strand, within GFF1988at 864.725 kb on - strand, within GFF1988at 864.725 kb on - strand, within GFF1988at 864.928 kb on + strand, within GFF1988at 864.928 kb on + strand, within GFF1988at 865.237 kb on + strand, within GFF1988at 865.238 kb on - strand, within GFF1988at 865.240 kb on + strand, within GFF1988at 865.240 kb on + strand, within GFF1988at 865.240 kb on + strand, within GFF1988at 865.240 kb on + strand, within GFF1988at 865.241 kb on - strand, within GFF1988at 865.241 kb on - strand, within GFF1988at 865.241 kb on - strand, within GFF1988at 865.241 kb on - strand, within GFF1988at 865.241 kb on - strand, within GFF1988at 865.241 kb on - strand, within GFF1988at 865.471 kb on + strandat 865.498 kb on + strandat 865.766 kb on + strand, within GFF1989at 865.766 kb on + strand, within GFF1989at 865.766 kb on + strand, within GFF1989at 865.767 kb on - strand, within GFF1989at 866.063 kb on + strand, within GFF1989at 866.063 kb on + strand, within GFF1989at 866.064 kb on - strand, within GFF1989at 866.373 kb on + strandat 866.373 kb on + strandat 866.374 kb on - strandat 866.400 kb on + strandat 866.400 kb on + strandat 866.400 kb on + strandat 866.400 kb on + strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.486 kb on + strandat 866.487 kb on - strandat 866.487 kb on - strandat 866.487 kb on - strandat 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.653 kb on - strand, within GFF1990at 866.653 kb on - strand, within GFF1990at 866.653 kb on - strand, within GFF1990at 866.670 kb on + strand, within GFF1990at 866.670 kb on + strand, within GFF1990at 866.670 kb on + strand, within GFF1990at 866.727 kb on + strand, within GFF1990at 866.728 kb on - strand, within GFF1990at 866.787 kb on + strand, within GFF1990at 866.788 kb on - strand, within GFF1990at 866.788 kb on - strand, within GFF1990at 866.788 kb on - strand, within GFF1990at 866.788 kb on - strand, within GFF1990at 866.901 kb on + strand, within GFF1990at 866.901 kb on + strand, within GFF1990at 866.901 kb on + strand, within GFF1990at 866.902 kb on - strand, within GFF1990at 866.902 kb on - strand, within GFF1990at 866.902 kb on - strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.955 kb on + strand, within GFF1990at 866.956 kb on - strand, within GFF1990

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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864,724 + GFF1988 0.20 -0.6
864,724 + GFF1988 0.20 +0.2
864,725 - GFF1988 0.20 -0.1
864,725 - GFF1988 0.20 +0.3
864,928 + GFF1988 0.42 +0.6
864,928 + GFF1988 0.42 +0.2
865,237 + GFF1988 0.76 -0.6
865,238 - GFF1988 0.76 -0.6
865,240 + GFF1988 0.76 -0.2
865,240 + GFF1988 0.76 +0.0
865,240 + GFF1988 0.76 -0.2
865,240 + GFF1988 0.76 -0.5
865,241 - GFF1988 0.76 -0.2
865,241 - GFF1988 0.76 -1.1
865,241 - GFF1988 0.76 -0.3
865,241 - GFF1988 0.76 +0.3
865,241 - GFF1988 0.76 +0.1
865,241 - GFF1988 0.76 -1.0
865,471 + -0.0
865,498 + -0.7
865,766 + GFF1989 0.32 +1.6
865,766 + GFF1989 0.32 +1.0
865,766 + GFF1989 0.32 +0.2
865,767 - GFF1989 0.32 -0.5
866,063 + GFF1989 0.78 +0.1
866,063 + GFF1989 0.78 -0.5
866,064 - GFF1989 0.78 +0.3
866,373 + -0.6
866,373 + -0.3
866,374 - -1.5
866,400 + -0.4
866,400 + +0.5
866,400 + -0.0
866,400 + -1.3
866,401 - +1.5
866,401 - -0.3
866,401 - +0.5
866,401 - +0.1
866,401 - -0.3
866,401 - +0.2
866,401 - -0.2
866,401 - -1.0
866,401 - +0.0
866,486 + -0.3
866,487 - -0.1
866,487 - -0.1
866,487 - -0.3
866,652 + GFF1990 0.13 -0.0
866,652 + GFF1990 0.13 +0.0
866,652 + GFF1990 0.13 -0.9
866,652 + GFF1990 0.13 -0.5
866,652 + GFF1990 0.13 +0.4
866,652 + GFF1990 0.13 +0.3
866,652 + GFF1990 0.13 +0.3
866,653 - GFF1990 0.14 +0.2
866,653 - GFF1990 0.14 +0.4
866,653 - GFF1990 0.14 +0.4
866,670 + GFF1990 0.14 -0.1
866,670 + GFF1990 0.14 -0.6
866,670 + GFF1990 0.14 -0.3
866,727 + GFF1990 0.17 +0.2
866,728 - GFF1990 0.17 -0.5
866,787 + GFF1990 0.20 -0.9
866,788 - GFF1990 0.20 -0.9
866,788 - GFF1990 0.20 +0.6
866,788 - GFF1990 0.20 +0.1
866,788 - GFF1990 0.20 +0.6
866,901 + GFF1990 0.25 -0.4
866,901 + GFF1990 0.25 -1.0
866,901 + GFF1990 0.25 +0.5
866,902 - GFF1990 0.25 -0.3
866,902 - GFF1990 0.25 +0.4
866,902 - GFF1990 0.25 -0.7
866,913 + GFF1990 0.26 +0.3
866,913 + GFF1990 0.26 +0.1
866,913 + GFF1990 0.26 -0.5
866,913 + GFF1990 0.26 -0.0
866,913 + GFF1990 0.26 +0.1
866,955 + GFF1990 0.28 -0.2
866,956 - GFF1990 0.28 +0.9

Or see this region's nucleotide sequence