Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1981 and GFF1982 are separated by 23 nucleotides GFF1982 and GFF1983 are separated by 86 nucleotides GFF1983 and GFF1984 are separated by 45 nucleotides
GFF1981 - FIG00441354: hypothetical protein, at 856,428 to 857,543
GFF1981
GFF1982 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 857,567 to 858,088
GFF1982
GFF1983 - Transcriptional regulator, MarR family, at 858,175 to 858,606
GFF1983
GFF1984 - Permease of the drug/metabolite transporter (DMT) superfamily, at 858,652 to 859,557
GFF1984
Position (kb) 857
858
859 Strain fitness (log2 ratio) -1
0
1
2 at 856.675 kb on + strand, within GFF1981 at 856.676 kb on - strand, within GFF1981 at 856.676 kb on - strand, within GFF1981 at 856.795 kb on + strand, within GFF1981 at 857.101 kb on + strand, within GFF1981 at 857.102 kb on - strand, within GFF1981 at 857.399 kb on + strand, within GFF1981 at 857.399 kb on + strand, within GFF1981 at 857.400 kb on - strand, within GFF1981 at 857.400 kb on - strand, within GFF1981 at 857.461 kb on + strand at 857.538 kb on - strand at 857.555 kb on + strand at 857.686 kb on + strand, within GFF1982 at 857.687 kb on - strand, within GFF1982 at 857.810 kb on + strand, within GFF1982 at 857.810 kb on + strand, within GFF1982 at 857.811 kb on - strand, within GFF1982 at 857.811 kb on - strand, within GFF1982 at 857.972 kb on + strand, within GFF1982 at 857.972 kb on + strand, within GFF1982 at 857.973 kb on - strand, within GFF1982 at 858.068 kb on + strand at 858.208 kb on + strand at 858.208 kb on + strand at 858.208 kb on + strand at 858.209 kb on - strand at 858.209 kb on - strand at 858.209 kb on - strand at 858.217 kb on + strand at 858.218 kb on - strand at 858.218 kb on - strand at 858.218 kb on - strand at 858.494 kb on + strand, within GFF1983 at 858.494 kb on + strand, within GFF1983 at 858.604 kb on + strand at 858.928 kb on + strand, within GFF1984 at 858.928 kb on + strand, within GFF1984 at 858.928 kb on + strand, within GFF1984 at 858.928 kb on + strand, within GFF1984 at 858.929 kb on + strand, within GFF1984 at 858.929 kb on - strand, within GFF1984 at 858.929 kb on - strand, within GFF1984 at 858.929 kb on - strand, within GFF1984 at 858.976 kb on + strand, within GFF1984 at 858.976 kb on + strand, within GFF1984 at 858.976 kb on + strand, within GFF1984
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 856,675 + GFF1981 0.22 +0.4 856,676 - GFF1981 0.22 +2.0 856,676 - GFF1981 0.22 +0.3 856,795 + GFF1981 0.33 -0.0 857,101 + GFF1981 0.60 -0.0 857,102 - GFF1981 0.60 +0.1 857,399 + GFF1981 0.87 -1.1 857,399 + GFF1981 0.87 +0.0 857,400 - GFF1981 0.87 -0.7 857,400 - GFF1981 0.87 +0.1 857,461 + +0.0 857,538 - +0.5 857,555 + +0.2 857,686 + GFF1982 0.23 -0.1 857,687 - GFF1982 0.23 +1.2 857,810 + GFF1982 0.47 +0.9 857,810 + GFF1982 0.47 +1.0 857,811 - GFF1982 0.47 +0.6 857,811 - GFF1982 0.47 +0.8 857,972 + GFF1982 0.78 -0.7 857,972 + GFF1982 0.78 -0.1 857,973 - GFF1982 0.78 -0.2 858,068 + +1.2 858,208 + +0.3 858,208 + +0.6 858,208 + -1.7 858,209 - -1.6 858,209 - +0.1 858,209 - -0.7 858,217 + -0.0 858,218 - +0.2 858,218 - +0.6 858,218 - +0.2 858,494 + GFF1983 0.74 +0.2 858,494 + GFF1983 0.74 +0.3 858,604 + -0.1 858,928 + GFF1984 0.30 +0.5 858,928 + GFF1984 0.30 -0.5 858,928 + GFF1984 0.30 +0.3 858,928 + GFF1984 0.30 +0.8 858,929 + GFF1984 0.31 +0.5 858,929 - GFF1984 0.31 +0.1 858,929 - GFF1984 0.31 +0.3 858,929 - GFF1984 0.31 +0.2 858,976 + GFF1984 0.36 -0.6 858,976 + GFF1984 0.36 +0.4 858,976 + GFF1984 0.36 -0.5
Or see this region's nucleotide sequence