Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1866 and GFF1867 overlap by 4 nucleotides GFF1867 and GFF1868 are separated by 87 nucleotides
GFF1866 - periplasmic sensor signal transduction histidine kinase, at 730,252 to 731,505
GFF1866
GFF1867 - Response regulator receiver:Transcriptional regulatory protein, C terminal, at 731,502 to 732,221
GFF1867
GFF1868 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 732,309 to 733,838
GFF1868
Position (kb) 731
732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 731.241 kb on - strand, within GFF1866 at 731.477 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.725 kb on + strand, within GFF1867 at 731.725 kb on + strand, within GFF1867 at 731.726 kb on - strand, within GFF1867 at 731.914 kb on + strand, within GFF1867 at 731.914 kb on + strand, within GFF1867 at 731.915 kb on - strand, within GFF1867 at 731.915 kb on - strand, within GFF1867 at 731.915 kb on - strand, within GFF1867 at 732.160 kb on + strand at 732.160 kb on + strand at 732.160 kb on + strand at 732.160 kb on + strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.234 kb on - strand at 732.296 kb on + strand at 732.296 kb on + strand at 732.296 kb on + strand at 732.296 kb on + strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.307 kb on - strand at 732.307 kb on - strand at 732.307 kb on - strand at 732.307 kb on - strand at 732.822 kb on + strand, within GFF1868 at 732.822 kb on + strand, within GFF1868 at 732.822 kb on + strand, within GFF1868 at 732.822 kb on + strand, within GFF1868 at 732.823 kb on - strand, within GFF1868
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 731,241 - GFF1866 0.79 -1.5 731,477 + -3.7 731,527 + +0.2 731,527 + -1.0 731,527 + +0.9 731,527 + +0.0 731,527 + -0.3 731,527 + +0.0 731,527 + +0.6 731,725 + GFF1867 0.31 +0.4 731,725 + GFF1867 0.31 +0.3 731,726 - GFF1867 0.31 +0.1 731,914 + GFF1867 0.57 +1.3 731,914 + GFF1867 0.57 -0.2 731,915 - GFF1867 0.57 -0.0 731,915 - GFF1867 0.57 -1.8 731,915 - GFF1867 0.57 +0.1 732,160 + +0.4 732,160 + +0.0 732,160 + -0.7 732,160 + +0.5 732,161 - +0.9 732,161 - +0.0 732,161 - +0.1 732,161 - +1.3 732,161 - +0.1 732,161 - +0.4 732,161 - -0.4 732,234 - +1.0 732,296 + -0.2 732,296 + +0.9 732,296 + -0.2 732,296 + -0.1 732,297 - -0.3 732,297 - -0.3 732,297 - -0.1 732,297 - -0.7 732,297 - -0.2 732,306 + -0.0 732,306 + +0.1 732,306 + -1.0 732,306 + -0.2 732,306 + -0.4 732,306 + -0.4 732,307 - -0.6 732,307 - -0.7 732,307 - +0.3 732,307 - +0.7 732,822 + GFF1868 0.34 +0.5 732,822 + GFF1868 0.34 +0.2 732,822 + GFF1868 0.34 -0.6 732,822 + GFF1868 0.34 -0.2 732,823 - GFF1868 0.34 +0.1
Or see this region's nucleotide sequence