Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1704 and GFF1705 overlap by 10 nucleotides GFF1705 and GFF1706 are separated by 22 nucleotides GFF1706 and GFF1707 are separated by 4 nucleotides GFF1707 and GFF1708 are separated by 11 nucleotides
GFF1704 - Periplasmic molybdate-binding domain, at 560,813 to 561,883
GFF1704
GFF1705 - 2-hydroxychromene-2-carboxylate isomerase, at 561,874 to 562,548
GFF1705
GFF1706 - YbaK/prolyl-tRNA synthetase associated region, at 562,571 to 562,798
GFF1706
GFF1707 - Uncharacterized protein SCO3165, at 562,803 to 563,312
GFF1707
GFF1708 - Homoserine/homoserine lactone efflux protein, at 563,324 to 563,965
GFF1708
Position (kb) 562
563 Strain fitness (log2 ratio) -1
0
1 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.719 kb on + strand, within GFF1704 at 561.719 kb on + strand, within GFF1704 at 561.719 kb on + strand, within GFF1704 at 561.719 kb on + strand, within GFF1704 at 561.720 kb on - strand, within GFF1704 at 561.828 kb on - strand at 561.956 kb on + strand, within GFF1705 at 561.957 kb on - strand, within GFF1705 at 561.957 kb on - strand, within GFF1705 at 561.957 kb on - strand, within GFF1705 at 562.223 kb on + strand, within GFF1705 at 562.362 kb on - strand, within GFF1705 at 562.362 kb on - strand, within GFF1705 at 562.509 kb on - strand at 562.526 kb on + strand at 562.527 kb on - strand at 562.527 kb on - strand at 562.649 kb on + strand, within GFF1706 at 563.454 kb on + strand, within GFF1708 at 563.454 kb on + strand, within GFF1708 at 563.455 kb on - strand, within GFF1708 at 563.455 kb on - strand, within GFF1708 at 563.722 kb on - strand, within GFF1708 at 563.722 kb on - strand, within GFF1708
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 561,626 + GFF1704 0.76 +1.5 561,626 + GFF1704 0.76 -1.0 561,626 + GFF1704 0.76 -1.3 561,626 + GFF1704 0.76 +0.4 561,626 + GFF1704 0.76 +0.3 561,626 + GFF1704 0.76 +0.4 561,626 + GFF1704 0.76 +0.8 561,626 + GFF1704 0.76 +0.0 561,626 + GFF1704 0.76 +0.1 561,626 + GFF1704 0.76 +0.3 561,626 + GFF1704 0.76 +0.3 561,627 - GFF1704 0.76 -0.4 561,627 - GFF1704 0.76 -1.7 561,627 - GFF1704 0.76 -0.0 561,627 - GFF1704 0.76 -0.8 561,627 - GFF1704 0.76 -0.7 561,627 - GFF1704 0.76 +0.4 561,627 - GFF1704 0.76 -0.8 561,627 - GFF1704 0.76 -0.9 561,719 + GFF1704 0.85 +0.4 561,719 + GFF1704 0.85 +0.3 561,719 + GFF1704 0.85 -0.6 561,719 + GFF1704 0.85 +0.4 561,720 - GFF1704 0.85 -0.4 561,828 - +0.4 561,956 + GFF1705 0.12 -0.0 561,957 - GFF1705 0.12 +0.4 561,957 - GFF1705 0.12 +0.3 561,957 - GFF1705 0.12 +0.2 562,223 + GFF1705 0.52 +0.5 562,362 - GFF1705 0.72 -0.3 562,362 - GFF1705 0.72 +0.3 562,509 - -0.3 562,526 + -0.8 562,527 - -0.8 562,527 - -0.1 562,649 + GFF1706 0.34 +0.5 563,454 + GFF1708 0.20 -0.7 563,454 + GFF1708 0.20 +0.1 563,455 - GFF1708 0.20 -0.0 563,455 - GFF1708 0.20 -0.4 563,722 - GFF1708 0.62 -0.5 563,722 - GFF1708 0.62 +0.2
Or see this region's nucleotide sequence