Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1702

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1700 and GFF1701 are separated by 0 nucleotidesGFF1701 and GFF1702 are separated by 92 nucleotidesGFF1702 and GFF1703 overlap by 4 nucleotides GFF1700 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 554,473 to 555,606 GFF1700 GFF1701 - Universal stress protein, at 555,607 to 556,047 GFF1701 GFF1702 - tungsten-containing formate dehydrogenase alpha subunit, at 556,140 to 558,983 GFF1702 GFF1703 - tungsten-containing formate dehydrogenase beta subunit, at 558,980 to 560,698 GFF1703 Position (kb) 556 557 558 559Strain fitness (log2 ratio) -1 0 1 2at 555.328 kb on + strand, within GFF1700at 555.328 kb on + strand, within GFF1700at 555.328 kb on + strand, within GFF1700at 555.329 kb on - strand, within GFF1700at 555.329 kb on - strand, within GFF1700at 555.406 kb on + strand, within GFF1700at 555.407 kb on - strand, within GFF1700at 555.407 kb on - strand, within GFF1700at 555.407 kb on - strand, within GFF1700at 555.502 kb on + strandat 555.502 kb on + strandat 555.503 kb on - strandat 555.503 kb on - strandat 555.503 kb on - strandat 555.529 kb on + strandat 555.529 kb on + strandat 555.529 kb on + strandat 555.530 kb on - strandat 555.530 kb on - strandat 555.530 kb on - strandat 555.761 kb on + strand, within GFF1701at 555.761 kb on + strand, within GFF1701at 555.762 kb on - strand, within GFF1701at 555.875 kb on + strand, within GFF1701at 555.875 kb on + strand, within GFF1701at 555.876 kb on - strand, within GFF1701at 555.876 kb on - strand, within GFF1701at 555.876 kb on - strand, within GFF1701at 555.917 kb on + strand, within GFF1701at 555.918 kb on - strand, within GFF1701at 556.106 kb on + strandat 556.106 kb on + strandat 556.106 kb on + strandat 556.107 kb on - strandat 556.107 kb on - strandat 556.107 kb on - strandat 556.107 kb on - strandat 556.192 kb on + strandat 556.192 kb on + strandat 556.192 kb on + strandat 556.192 kb on + strandat 556.192 kb on + strandat 556.192 kb on + strandat 556.193 kb on - strandat 556.193 kb on - strandat 556.193 kb on - strandat 556.264 kb on + strandat 556.265 kb on - strandat 556.265 kb on - strandat 556.639 kb on + strand, within GFF1702at 556.717 kb on + strand, within GFF1702at 556.718 kb on - strand, within GFF1702at 556.718 kb on - strand, within GFF1702at 556.777 kb on + strand, within GFF1702at 556.777 kb on + strand, within GFF1702at 556.777 kb on + strand, within GFF1702at 556.778 kb on - strand, within GFF1702at 556.778 kb on - strand, within GFF1702at 556.778 kb on - strand, within GFF1702at 557.089 kb on + strand, within GFF1702at 557.206 kb on + strand, within GFF1702at 557.207 kb on - strand, within GFF1702at 557.536 kb on + strand, within GFF1702at 557.917 kb on + strand, within GFF1702at 557.917 kb on + strand, within GFF1702at 557.917 kb on + strand, within GFF1702at 557.917 kb on + strand, within GFF1702at 557.918 kb on - strand, within GFF1702at 557.918 kb on - strand, within GFF1702at 557.918 kb on - strand, within GFF1702at 557.918 kb on - strand, within GFF1702at 558.167 kb on - strand, within GFF1702at 558.262 kb on + strand, within GFF1702at 558.263 kb on - strand, within GFF1702at 558.263 kb on - strand, within GFF1702at 558.263 kb on - strand, within GFF1702at 559.368 kb on + strand, within GFF1703at 559.374 kb on + strand, within GFF1703at 559.374 kb on + strand, within GFF1703at 559.375 kb on - strand, within GFF1703at 559.375 kb on - strand, within GFF1703at 559.375 kb on - strand, within GFF1703at 559.375 kb on - strand, within GFF1703at 559.375 kb on - strand, within GFF1703at 559.704 kb on + strand, within GFF1703at 559.704 kb on + strand, within GFF1703at 559.705 kb on - strand, within GFF1703at 559.705 kb on - strand, within GFF1703at 559.705 kb on - strand, within GFF1703at 559.830 kb on + strand, within GFF1703at 559.831 kb on - strand, within GFF1703at 559.831 kb on - strand, within GFF1703at 559.831 kb on - strand, within GFF1703at 559.845 kb on + strand, within GFF1703at 559.845 kb on + strand, within GFF1703at 559.845 kb on + strand, within GFF1703at 559.846 kb on - strand, within GFF1703

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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555,328 + GFF1700 0.75 +0.7
555,328 + GFF1700 0.75 -0.4
555,328 + GFF1700 0.75 +0.9
555,329 - GFF1700 0.75 -0.1
555,329 - GFF1700 0.75 -0.7
555,406 + GFF1700 0.82 +0.1
555,407 - GFF1700 0.82 -0.1
555,407 - GFF1700 0.82 -0.8
555,407 - GFF1700 0.82 -0.1
555,502 + -0.3
555,502 + +0.7
555,503 - +0.0
555,503 - +0.6
555,503 - +0.2
555,529 + -0.6
555,529 + +0.3
555,529 + +0.6
555,530 - -0.6
555,530 - -1.7
555,530 - +0.8
555,761 + GFF1701 0.35 +1.3
555,761 + GFF1701 0.35 -0.9
555,762 - GFF1701 0.35 +1.1
555,875 + GFF1701 0.61 -0.4
555,875 + GFF1701 0.61 +0.2
555,876 - GFF1701 0.61 -0.1
555,876 - GFF1701 0.61 -1.3
555,876 - GFF1701 0.61 +0.4
555,917 + GFF1701 0.70 +0.0
555,918 - GFF1701 0.71 -0.9
556,106 + +0.5
556,106 + +1.8
556,106 + -0.1
556,107 - +1.6
556,107 - +0.3
556,107 - +0.1
556,107 - +0.4
556,192 + +0.9
556,192 + -0.4
556,192 + -0.1
556,192 + -0.3
556,192 + -1.0
556,192 + +0.2
556,193 - +0.2
556,193 - +1.4
556,193 - +0.1
556,264 + -0.7
556,265 - -0.1
556,265 - -1.1
556,639 + GFF1702 0.18 -0.8
556,717 + GFF1702 0.20 +0.1
556,718 - GFF1702 0.20 +0.8
556,718 - GFF1702 0.20 -0.4
556,777 + GFF1702 0.22 -0.2
556,777 + GFF1702 0.22 +0.3
556,777 + GFF1702 0.22 +0.5
556,778 - GFF1702 0.22 +0.7
556,778 - GFF1702 0.22 -1.5
556,778 - GFF1702 0.22 +0.9
557,089 + GFF1702 0.33 -0.0
557,206 + GFF1702 0.37 +0.3
557,207 - GFF1702 0.38 -0.3
557,536 + GFF1702 0.49 +0.0
557,917 + GFF1702 0.62 -0.3
557,917 + GFF1702 0.62 -0.5
557,917 + GFF1702 0.62 -0.1
557,917 + GFF1702 0.62 +0.4
557,918 - GFF1702 0.63 +0.7
557,918 - GFF1702 0.63 +0.0
557,918 - GFF1702 0.63 -0.4
557,918 - GFF1702 0.63 +0.0
558,167 - GFF1702 0.71 -0.6
558,262 + GFF1702 0.75 -0.8
558,263 - GFF1702 0.75 +0.4
558,263 - GFF1702 0.75 -0.2
558,263 - GFF1702 0.75 -0.8
559,368 + GFF1703 0.23 -1.1
559,374 + GFF1703 0.23 -0.5
559,374 + GFF1703 0.23 -0.2
559,375 - GFF1703 0.23 +0.6
559,375 - GFF1703 0.23 +0.9
559,375 - GFF1703 0.23 -0.3
559,375 - GFF1703 0.23 +1.0
559,375 - GFF1703 0.23 +0.0
559,704 + GFF1703 0.42 -0.1
559,704 + GFF1703 0.42 -0.1
559,705 - GFF1703 0.42 -0.3
559,705 - GFF1703 0.42 -0.2
559,705 - GFF1703 0.42 +1.2
559,830 + GFF1703 0.49 -0.5
559,831 - GFF1703 0.50 -0.0
559,831 - GFF1703 0.50 -0.0
559,831 - GFF1703 0.50 -0.1
559,845 + GFF1703 0.50 -0.8
559,845 + GFF1703 0.50 +0.1
559,845 + GFF1703 0.50 -0.3
559,846 - GFF1703 0.50 -0.5

Or see this region's nucleotide sequence