Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1645

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
499,862	-		GFF1644	0.51	-0.3
499,894	+		GFF1644	0.55	-0.1
500,285	-				+0.2
500,285	-				-0.8
500,355	+				+0.4
500,400	+				-0.4
500,401	-				+0.2
500,402	+				+0.1
500,413	+				+0.2
500,413	+				-0.2
500,450	-				+0.2
500,450	-				+0.4
500,464	+				+1.1
500,482	+				-1.1
500,483	-				+0.5
500,949	-		GFF1645	0.30	+1.0
500,966	+		GFF1645	0.31	-0.0
500,966	+		GFF1645	0.31	+0.5
501,534	-		GFF1645	0.79	-0.5
501,811	+				-0.2
501,860	-				+1.1
502,340	-		GFF1646	0.46	+0.2
502,432	+		GFF1646	0.53	-0.5
502,432	+		GFF1646	0.53	-0.3
502,432	+		GFF1646	0.53	+0.1
502,433	-		GFF1646	0.53	+0.3
502,433	-		GFF1646	0.53	-0.4
502,433	-		GFF1646	0.53	-0.2
502,435	+		GFF1646	0.54	+0.8
502,492	+		GFF1646	0.58	+0.7
502,738	+		GFF1646	0.79	-0.4
502,738	+		GFF1646	0.79	-0.2
502,739	-		GFF1646	0.79	+0.3