Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1593 and GFF1594 are separated by 82 nucleotides GFF1594 and GFF1595 are separated by 97 nucleotides
GFF1593 - hypothetical protein, at 448,590 to 449,189
GFF1593
GFF1594 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 449,272 to 450,252
GFF1594
GFF1595 - 2,5-dichlorohydroquinone reductive dechlorinase (EC 2.5.1.-), at 450,350 to 451,330
GFF1595
Position (kb) 449
450
451 Strain fitness (log2 ratio) -2
-1
0
1 at 448.371 kb on - strand at 448.491 kb on - strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.568 kb on + strand at 448.568 kb on + strand at 448.737 kb on + strand, within GFF1593 at 448.738 kb on - strand, within GFF1593 at 449.079 kb on + strand, within GFF1593 at 449.151 kb on + strand at 449.151 kb on + strand at 449.187 kb on + strand at 449.187 kb on + strand at 449.443 kb on + strand, within GFF1594 at 449.479 kb on + strand, within GFF1594 at 449.479 kb on + strand, within GFF1594 at 449.479 kb on + strand, within GFF1594 at 449.480 kb on - strand, within GFF1594 at 449.701 kb on + strand, within GFF1594 at 449.701 kb on + strand, within GFF1594 at 449.702 kb on - strand, within GFF1594 at 449.945 kb on - strand, within GFF1594 at 449.945 kb on - strand, within GFF1594 at 450.321 kb on + strand at 450.363 kb on + strand at 450.524 kb on + strand, within GFF1595 at 450.524 kb on + strand, within GFF1595 at 450.563 kb on + strand, within GFF1595 at 450.563 kb on + strand, within GFF1595 at 450.563 kb on + strand, within GFF1595 at 450.563 kb on + strand, within GFF1595 at 450.564 kb on - strand, within GFF1595 at 450.564 kb on - strand, within GFF1595 at 450.564 kb on - strand, within GFF1595 at 450.564 kb on - strand, within GFF1595 at 450.564 kb on - strand, within GFF1595 at 450.851 kb on + strand, within GFF1595 at 450.851 kb on + strand, within GFF1595 at 450.960 kb on - strand, within GFF1595 at 450.960 kb on - strand, within GFF1595 at 450.960 kb on - strand, within GFF1595 at 450.972 kb on - strand, within GFF1595 at 451.073 kb on + strand, within GFF1595 at 451.073 kb on + strand, within GFF1595 at 451.073 kb on + strand, within GFF1595
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 448,371 - -0.5 448,491 - +0.5 448,556 + -1.8 448,556 + -0.1 448,556 + +0.2 448,556 + -0.3 448,556 + -0.6 448,556 + -0.7 448,556 + +0.1 448,557 - -1.2 448,557 - +0.6 448,557 - -0.7 448,557 - +0.5 448,557 - +0.6 448,557 - -0.1 448,557 - -0.9 448,557 - +0.1 448,557 - +0.6 448,557 - -0.2 448,557 - -1.1 448,557 - -0.4 448,568 + -1.4 448,568 + -0.1 448,737 + GFF1593 0.24 -0.3 448,738 - GFF1593 0.25 -1.3 449,079 + GFF1593 0.81 -0.8 449,151 + -0.9 449,151 + -1.2 449,187 + +0.0 449,187 + -0.3 449,443 + GFF1594 0.17 +0.1 449,479 + GFF1594 0.21 -0.5 449,479 + GFF1594 0.21 +0.4 449,479 + GFF1594 0.21 -1.9 449,480 - GFF1594 0.21 +0.1 449,701 + GFF1594 0.44 -0.9 449,701 + GFF1594 0.44 -0.4 449,702 - GFF1594 0.44 -0.1 449,945 - GFF1594 0.69 -0.6 449,945 - GFF1594 0.69 +0.1 450,321 + -1.0 450,363 + -0.2 450,524 + GFF1595 0.18 +0.2 450,524 + GFF1595 0.18 -0.0 450,563 + GFF1595 0.22 +1.1 450,563 + GFF1595 0.22 -0.2 450,563 + GFF1595 0.22 +0.5 450,563 + GFF1595 0.22 +0.3 450,564 - GFF1595 0.22 -0.1 450,564 - GFF1595 0.22 +0.1 450,564 - GFF1595 0.22 -1.1 450,564 - GFF1595 0.22 -0.1 450,564 - GFF1595 0.22 -0.2 450,851 + GFF1595 0.51 +0.7 450,851 + GFF1595 0.51 +0.2 450,960 - GFF1595 0.62 -1.3 450,960 - GFF1595 0.62 +0.1 450,960 - GFF1595 0.62 -0.6 450,972 - GFF1595 0.63 +0.2 451,073 + GFF1595 0.74 +1.1 451,073 + GFF1595 0.74 -0.9 451,073 + GFF1595 0.74 -0.4
Or see this region's nucleotide sequence