Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1565 and GFF1566 are separated by 24 nucleotides GFF1566 and GFF1567 are separated by 7 nucleotides
GFF1565 - Tricarboxylate transport protein TctC, at 419,288 to 420,265
GFF1565
GFF1566 - Enoyl-CoA hydratase (EC 4.2.1.17), at 420,290 to 421,084
GFF1566
GFF1567 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 421,092 to 423,191
GFF1567
Position (kb) 420
421
422 Strain fitness (log2 ratio) -2
-1
0
1 at 419.702 kb on + strand, within GFF1565 at 419.759 kb on + strand, within GFF1565 at 419.759 kb on + strand, within GFF1565 at 419.759 kb on + strand, within GFF1565 at 419.759 kb on + strand, within GFF1565 at 419.760 kb on - strand, within GFF1565 at 420.710 kb on + strand, within GFF1566 at 420.710 kb on + strand, within GFF1566 at 420.711 kb on - strand, within GFF1566 at 420.711 kb on - strand, within GFF1566 at 420.711 kb on - strand, within GFF1566 at 420.749 kb on + strand, within GFF1566 at 420.749 kb on + strand, within GFF1566 at 420.749 kb on + strand, within GFF1566 at 420.750 kb on - strand, within GFF1566 at 420.750 kb on - strand, within GFF1566 at 421.019 kb on + strand at 421.019 kb on + strand at 421.020 kb on - strand at 421.227 kb on + strand at 421.227 kb on + strand at 421.744 kb on - strand, within GFF1567 at 421.902 kb on + strand, within GFF1567 at 421.903 kb on - strand, within GFF1567 at 421.903 kb on - strand, within GFF1567 at 422.061 kb on + strand, within GFF1567 at 422.061 kb on + strand, within GFF1567 at 422.062 kb on - strand, within GFF1567
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 419,702 + GFF1565 0.42 -0.7 419,759 + GFF1565 0.48 -0.7 419,759 + GFF1565 0.48 +0.2 419,759 + GFF1565 0.48 -0.1 419,759 + GFF1565 0.48 -0.3 419,760 - GFF1565 0.48 -0.3 420,710 + GFF1566 0.53 -0.5 420,710 + GFF1566 0.53 +0.5 420,711 - GFF1566 0.53 -1.5 420,711 - GFF1566 0.53 -2.4 420,711 - GFF1566 0.53 -0.5 420,749 + GFF1566 0.58 -0.5 420,749 + GFF1566 0.58 -0.9 420,749 + GFF1566 0.58 -0.4 420,750 - GFF1566 0.58 -0.1 420,750 - GFF1566 0.58 -0.0 421,019 + +0.2 421,019 + -0.2 421,020 - +0.1 421,227 + -0.9 421,227 + -0.1 421,744 - GFF1567 0.31 +0.0 421,902 + GFF1567 0.39 +0.2 421,903 - GFF1567 0.39 +0.3 421,903 - GFF1567 0.39 +0.6 422,061 + GFF1567 0.46 -0.1 422,061 + GFF1567 0.46 -1.7 422,062 - GFF1567 0.46 +0.3
Or see this region's nucleotide sequence