Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1525

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
379,447	+		GFF1524	0.51	+1.7
379,447	+		GFF1524	0.51	+0.3
379,802	-		GFF1524	0.88	+0.3
380,235	+		GFF1525	0.18	+0.1
380,463	+		GFF1525	0.33	-0.2
380,464	-		GFF1525	0.33	-0.0
380,692	-		GFF1525	0.48	+0.3
380,692	-		GFF1525	0.48	+0.1
381,153	+		GFF1525	0.78	+0.1
381,154	-		GFF1525	0.78	+0.8
381,192	+		GFF1525	0.80	-0.1
381,192	+		GFF1525	0.80	+0.8
381,193	-		GFF1525	0.80	+0.9
381,270	+		GFF1525	0.85	-0.4
381,397	-				-0.0
381,397	-				+0.2
381,492	+				-0.1
381,492	+				-0.3
381,545	+				-1.1
381,546	-				+1.4
381,546	-				+0.4
381,575	+				+0.3
381,605	+				+0.9
381,740	+		GFF1526	0.14	-0.3
381,741	-		GFF1526	0.14	-0.2
381,893	+		GFF1526	0.25	-1.0
381,893	+		GFF1526	0.25	-0.1
381,893	+		GFF1526	0.25	+1.3