Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1501 and GFF1502 are separated by 78 nucleotides GFF1502 and GFF1503 are separated by 19 nucleotides
GFF1501 - Transcriptional regulator, LacI family, at 350,869 to 351,912
GFF1501
GFF1502 - D-galactarate dehydratase (EC 4.2.1.42), at 351,991 to 353,595
GFF1502
GFF1503 - hypothetical protein, at 353,615 to 354,568
GFF1503
Position (kb) 351
352
353
354 Strain fitness (log2 ratio) -1
0
1 at 351.590 kb on + strand, within GFF1501 at 351.726 kb on - strand, within GFF1501 at 351.979 kb on + strand at 351.979 kb on + strand at 351.979 kb on + strand at 351.980 kb on - strand at 352.345 kb on + strand, within GFF1502 at 352.345 kb on + strand, within GFF1502 at 352.346 kb on - strand, within GFF1502 at 352.522 kb on + strand, within GFF1502 at 353.077 kb on + strand, within GFF1502 at 353.078 kb on - strand, within GFF1502 at 353.078 kb on - strand, within GFF1502 at 353.257 kb on + strand, within GFF1502 at 353.258 kb on - strand, within GFF1502 at 353.353 kb on + strand, within GFF1502 at 353.757 kb on + strand, within GFF1503 at 353.758 kb on - strand, within GFF1503 at 353.758 kb on - strand, within GFF1503 at 353.758 kb on - strand, within GFF1503 at 353.758 kb on - strand, within GFF1503 at 353.886 kb on + strand, within GFF1503 at 353.899 kb on - strand, within GFF1503 at 353.937 kb on + strand, within GFF1503 at 353.938 kb on - strand, within GFF1503 at 353.938 kb on - strand, within GFF1503 at 353.938 kb on - strand, within GFF1503 at 353.938 kb on - strand, within GFF1503 at 353.938 kb on - strand, within GFF1503 at 353.938 kb on - strand, within GFF1503 at 353.958 kb on + strand, within GFF1503 at 353.958 kb on + strand, within GFF1503 at 353.959 kb on - strand, within GFF1503 at 354.063 kb on + strand, within GFF1503 at 354.063 kb on + strand, within GFF1503 at 354.063 kb on + strand, within GFF1503 at 354.064 kb on - strand, within GFF1503 at 354.064 kb on - strand, within GFF1503 at 354.064 kb on - strand, within GFF1503 at 354.064 kb on - strand, within GFF1503 at 354.064 kb on - strand, within GFF1503 at 354.064 kb on - strand, within GFF1503 at 354.196 kb on - strand, within GFF1503 at 354.205 kb on - strand, within GFF1503 at 354.216 kb on + strand, within GFF1503 at 354.216 kb on + strand, within GFF1503 at 354.265 kb on + strand, within GFF1503 at 354.265 kb on + strand, within GFF1503 at 354.265 kb on + strand, within GFF1503 at 354.265 kb on + strand, within GFF1503 at 354.441 kb on + strand, within GFF1503 at 354.442 kb on - strand, within GFF1503
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 351,590 + GFF1501 0.69 -1.6 351,726 - GFF1501 0.82 -0.5 351,979 + -0.6 351,979 + +1.3 351,979 + -0.2 351,980 - +0.3 352,345 + GFF1502 0.22 -0.1 352,345 + GFF1502 0.22 +1.2 352,346 - GFF1502 0.22 -1.3 352,522 + GFF1502 0.33 -0.1 353,077 + GFF1502 0.68 -0.0 353,078 - GFF1502 0.68 -0.5 353,078 - GFF1502 0.68 -0.1 353,257 + GFF1502 0.79 +0.7 353,258 - GFF1502 0.79 -0.9 353,353 + GFF1502 0.85 -0.4 353,757 + GFF1503 0.15 -0.9 353,758 - GFF1503 0.15 +0.2 353,758 - GFF1503 0.15 -1.0 353,758 - GFF1503 0.15 +0.7 353,758 - GFF1503 0.15 -1.7 353,886 + GFF1503 0.28 -0.8 353,899 - GFF1503 0.30 +0.0 353,937 + GFF1503 0.34 -0.2 353,938 - GFF1503 0.34 -0.6 353,938 - GFF1503 0.34 -0.6 353,938 - GFF1503 0.34 -1.4 353,938 - GFF1503 0.34 -0.1 353,938 - GFF1503 0.34 +0.4 353,938 - GFF1503 0.34 -0.3 353,958 + GFF1503 0.36 +0.4 353,958 + GFF1503 0.36 -0.4 353,959 - GFF1503 0.36 +0.0 354,063 + GFF1503 0.47 -0.0 354,063 + GFF1503 0.47 +0.2 354,063 + GFF1503 0.47 +0.0 354,064 - GFF1503 0.47 +0.1 354,064 - GFF1503 0.47 -0.4 354,064 - GFF1503 0.47 +0.1 354,064 - GFF1503 0.47 +0.4 354,064 - GFF1503 0.47 -0.9 354,064 - GFF1503 0.47 -0.6 354,196 - GFF1503 0.61 +0.1 354,205 - GFF1503 0.62 -0.1 354,216 + GFF1503 0.63 +0.1 354,216 + GFF1503 0.63 +0.1 354,265 + GFF1503 0.68 -1.1 354,265 + GFF1503 0.68 -1.0 354,265 + GFF1503 0.68 -0.1 354,265 + GFF1503 0.68 -0.0 354,441 + GFF1503 0.87 +0.0 354,442 - GFF1503 0.87 +1.0
Or see this region's nucleotide sequence