Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1468 and GFF1469 are separated by 12 nucleotides GFF1469 and GFF1470 are separated by 284 nucleotides GFF1470 and GFF1471 are separated by 51 nucleotides GFF1471 and GFF1472 are separated by 9 nucleotides
GFF1468 - putative inner membrane protein, at 319,342 to 320,094
GFF1468
GFF1469 - hypothetical protein, at 320,107 to 320,220
GFF1469
GFF1470 - transporter, putative, at 320,505 to 322,079
GFF1470
GFF1471 - hypothetical protein, at 322,131 to 322,499
GFF1471
GFF1472 - Regulatory protein, LuxR:Response regulator receiver, at 322,509 to 323,138
GFF1472
Position (kb) 320
321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 319.544 kb on + strand, within GFF1468 at 320.290 kb on - strand at 320.290 kb on - strand at 320.306 kb on + strand at 320.306 kb on + strand at 320.307 kb on - strand at 320.521 kb on + strand at 320.521 kb on + strand at 320.521 kb on + strand at 320.522 kb on - strand at 320.522 kb on - strand at 320.522 kb on - strand at 320.522 kb on - strand at 320.522 kb on - strand at 320.522 kb on - strand at 320.621 kb on - strand at 320.621 kb on - strand at 320.657 kb on - strand at 320.657 kb on - strand at 320.657 kb on - strand at 320.683 kb on + strand, within GFF1470 at 320.683 kb on + strand, within GFF1470 at 320.684 kb on - strand, within GFF1470 at 320.684 kb on - strand, within GFF1470 at 321.139 kb on + strand, within GFF1470 at 321.139 kb on + strand, within GFF1470 at 321.140 kb on - strand, within GFF1470 at 321.140 kb on - strand, within GFF1470 at 321.140 kb on - strand, within GFF1470 at 321.140 kb on - strand, within GFF1470 at 321.140 kb on - strand, within GFF1470 at 321.631 kb on + strand, within GFF1470 at 321.631 kb on + strand, within GFF1470 at 321.632 kb on - strand, within GFF1470 at 322.151 kb on - strand at 322.219 kb on + strand, within GFF1471 at 322.219 kb on + strand, within GFF1471 at 322.219 kb on + strand, within GFF1471 at 322.219 kb on + strand, within GFF1471 at 322.220 kb on - strand, within GFF1471 at 322.220 kb on - strand, within GFF1471 at 322.220 kb on - strand, within GFF1471 at 322.254 kb on - strand, within GFF1471 at 322.265 kb on - strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.286 kb on - strand, within GFF1471 at 322.286 kb on - strand, within GFF1471 at 322.301 kb on - strand, within GFF1471 at 322.315 kb on + strand, within GFF1471 at 322.315 kb on + strand, within GFF1471 at 322.510 kb on + strand at 322.534 kb on + strand at 322.768 kb on + strand, within GFF1472 at 322.768 kb on + strand, within GFF1472 at 322.768 kb on + strand, within GFF1472 at 322.768 kb on + strand, within GFF1472 at 322.838 kb on - strand, within GFF1472 at 322.873 kb on + strand, within GFF1472 at 322.873 kb on + strand, within GFF1472 at 322.874 kb on - strand, within GFF1472 at 322.874 kb on - strand, within GFF1472 at 322.874 kb on - strand, within GFF1472 at 322.889 kb on - strand, within GFF1472 at 323.033 kb on - strand, within GFF1472
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 319,544 + GFF1468 0.27 -0.3 320,290 - +1.0 320,290 - -1.2 320,306 + +1.1 320,306 + +0.3 320,307 - +0.3 320,521 + -0.2 320,521 + +0.2 320,521 + -1.3 320,522 - +0.2 320,522 - -0.0 320,522 - -0.1 320,522 - +0.5 320,522 - +0.4 320,522 - -0.0 320,621 - -1.7 320,621 - +1.0 320,657 - -2.1 320,657 - +0.0 320,657 - -0.8 320,683 + GFF1470 0.11 -1.5 320,683 + GFF1470 0.11 -0.1 320,684 - GFF1470 0.11 +0.1 320,684 - GFF1470 0.11 -0.1 321,139 + GFF1470 0.40 -0.1 321,139 + GFF1470 0.40 +1.6 321,140 - GFF1470 0.40 -0.0 321,140 - GFF1470 0.40 -0.5 321,140 - GFF1470 0.40 +1.5 321,140 - GFF1470 0.40 -0.3 321,140 - GFF1470 0.40 -0.3 321,631 + GFF1470 0.71 +0.1 321,631 + GFF1470 0.71 -2.8 321,632 - GFF1470 0.72 +0.5 322,151 - +0.7 322,219 + GFF1471 0.24 -1.8 322,219 + GFF1471 0.24 +0.1 322,219 + GFF1471 0.24 +0.0 322,219 + GFF1471 0.24 +1.2 322,220 - GFF1471 0.24 +0.1 322,220 - GFF1471 0.24 -0.2 322,220 - GFF1471 0.24 +0.0 322,254 - GFF1471 0.33 +0.2 322,265 - GFF1471 0.36 +0.3 322,285 + GFF1471 0.42 -0.2 322,285 + GFF1471 0.42 -0.3 322,285 + GFF1471 0.42 +0.3 322,285 + GFF1471 0.42 +0.3 322,285 + GFF1471 0.42 +0.2 322,285 + GFF1471 0.42 +0.2 322,285 + GFF1471 0.42 +0.4 322,286 - GFF1471 0.42 -0.3 322,286 - GFF1471 0.42 -1.3 322,301 - GFF1471 0.46 +1.0 322,315 + GFF1471 0.50 +0.1 322,315 + GFF1471 0.50 +1.1 322,510 + -0.8 322,534 + +0.5 322,768 + GFF1472 0.41 -0.2 322,768 + GFF1472 0.41 +1.1 322,768 + GFF1472 0.41 -0.6 322,768 + GFF1472 0.41 +0.3 322,838 - GFF1472 0.52 +0.3 322,873 + GFF1472 0.58 -0.1 322,873 + GFF1472 0.58 +0.1 322,874 - GFF1472 0.58 +0.8 322,874 - GFF1472 0.58 +0.0 322,874 - GFF1472 0.58 +0.8 322,889 - GFF1472 0.60 +0.6 323,033 - GFF1472 0.83 +0.2
Or see this region's nucleotide sequence