Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1438 and GFF1439 are separated by 66 nucleotides GFF1439 and GFF1440 are separated by 534 nucleotides GFF1440 and GFF1441 are separated by 159 nucleotides
GFF1438 - Flagellar transcriptional activator FlhC, at 293,828 to 294,364
GFF1438
GFF1439 - Flagellar transcriptional activator FlhD, at 294,431 to 294,766
GFF1439
GFF1440 - Flagellin protein FlaA, at 295,301 to 296,488
GFF1440
GFF1441 - Flagellar hook-associated protein FliD, at 296,648 to 298,057
GFF1441
Position (kb) 295
296
297 Strain fitness (log2 ratio) -1
0
1 at 294.666 kb on + strand, within GFF1439 at 294.717 kb on + strand, within GFF1439 at 294.717 kb on + strand, within GFF1439 at 294.717 kb on + strand, within GFF1439 at 294.718 kb on - strand, within GFF1439 at 294.718 kb on - strand, within GFF1439 at 294.718 kb on - strand, within GFF1439 at 294.718 kb on - strand, within GFF1439 at 294.718 kb on - strand, within GFF1439 at 294.718 kb on - strand, within GFF1439 at 294.812 kb on + strand at 294.812 kb on + strand at 294.812 kb on + strand at 294.812 kb on + strand at 294.813 kb on - strand at 294.904 kb on - strand at 294.914 kb on + strand at 295.065 kb on + strand at 295.066 kb on - strand at 295.287 kb on + strand at 295.287 kb on + strand at 295.288 kb on - strand at 295.296 kb on + strand at 295.296 kb on + strand at 295.296 kb on + strand at 295.297 kb on - strand at 295.297 kb on - strand at 295.300 kb on + strand at 295.301 kb on - strand at 296.048 kb on + strand, within GFF1440 at 296.048 kb on + strand, within GFF1440 at 296.048 kb on + strand, within GFF1440 at 296.568 kb on + strand at 296.569 kb on - strand at 296.569 kb on - strand at 296.569 kb on - strand at 297.387 kb on - strand, within GFF1441 at 297.387 kb on - strand, within GFF1441 at 297.387 kb on - strand, within GFF1441
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 294,666 + GFF1439 0.70 -0.2 294,717 + GFF1439 0.85 -0.7 294,717 + GFF1439 0.85 +0.4 294,717 + GFF1439 0.85 -0.3 294,718 - GFF1439 0.85 +0.2 294,718 - GFF1439 0.85 -0.8 294,718 - GFF1439 0.85 -0.9 294,718 - GFF1439 0.85 -0.5 294,718 - GFF1439 0.85 -1.4 294,718 - GFF1439 0.85 +0.1 294,812 + -1.1 294,812 + +1.4 294,812 + +0.9 294,812 + +1.0 294,813 - +0.2 294,904 - -0.0 294,914 + -1.4 295,065 + -0.0 295,066 - +0.2 295,287 + -0.9 295,287 + +0.1 295,288 - -0.5 295,296 + -0.3 295,296 + -0.2 295,296 + +0.1 295,297 - -0.5 295,297 - -0.6 295,300 + +0.1 295,301 - +0.5 296,048 + GFF1440 0.63 +0.2 296,048 + GFF1440 0.63 +0.2 296,048 + GFF1440 0.63 +0.5 296,568 + -0.7 296,569 - +0.3 296,569 - -0.9 296,569 - -1.4 297,387 - GFF1441 0.52 -1.1 297,387 - GFF1441 0.52 +0.0 297,387 - GFF1441 0.52 -0.3
Or see this region's nucleotide sequence