Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1363

Experiment: Ying_Nucleobase14 rep A; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1362 and GFF1363 are separated by 189 nucleotidesGFF1363 and GFF1364 are separated by 70 nucleotidesGFF1364 and GFF1365 are separated by 34 nucleotides GFF1362 - Heat shock protein 60 family chaperone GroEL, at 217,071 to 218,717 GFF1362 GFF1363 - Transaldolase (EC 2.2.1.2), at 218,907 to 219,848 GFF1363 GFF1364 - Phosphogluconate repressor HexR, RpiR family, at 219,919 to 220,767 GFF1364 GFF1365 - Putative glutathione transporter, ATP-binding component, at 220,802 to 221,878 GFF1365 Position (kb) 218 219 220Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 218.687 kb on + strandat 218.715 kb on + strandat 218.715 kb on + strandat 218.715 kb on + strandat 218.715 kb on + strandat 218.715 kb on + strandat 218.715 kb on + strandat 218.715 kb on + strandat 218.715 kb on + strandat 218.715 kb on + strandat 218.715 kb on + strandat 218.716 kb on - strandat 218.716 kb on - strandat 218.716 kb on - strandat 218.716 kb on - strandat 218.716 kb on - strandat 218.716 kb on - strandat 218.716 kb on - strandat 218.716 kb on - strandat 218.716 kb on - strandat 218.716 kb on - strandat 218.780 kb on + strandat 218.780 kb on + strandat 218.781 kb on - strandat 218.781 kb on - strandat 218.908 kb on + strandat 218.908 kb on + strandat 218.908 kb on + strandat 218.908 kb on + strandat 218.908 kb on + strandat 218.908 kb on + strandat 218.908 kb on + strandat 218.908 kb on + strandat 218.909 kb on - strandat 218.909 kb on - strandat 218.909 kb on - strandat 218.909 kb on - strandat 218.909 kb on - strandat 219.220 kb on + strand, within GFF1363at 219.220 kb on + strand, within GFF1363at 219.220 kb on + strand, within GFF1363at 219.220 kb on + strand, within GFF1363at 219.221 kb on - strand, within GFF1363at 219.221 kb on - strand, within GFF1363at 219.221 kb on - strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.313 kb on + strand, within GFF1363at 219.313 kb on + strand, within GFF1363at 219.313 kb on + strand, within GFF1363at 219.313 kb on + strand, within GFF1363at 219.314 kb on - strand, within GFF1363at 219.314 kb on - strand, within GFF1363at 219.314 kb on - strand, within GFF1363at 219.322 kb on + strand, within GFF1363at 219.322 kb on + strand, within GFF1363at 219.322 kb on + strand, within GFF1363at 219.323 kb on - strand, within GFF1363at 219.323 kb on - strand, within GFF1363at 219.464 kb on + strand, within GFF1363at 219.465 kb on - strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.515 kb on - strand, within GFF1363at 219.515 kb on - strand, within GFF1363at 219.710 kb on - strand, within GFF1363at 219.710 kb on - strand, within GFF1363at 219.710 kb on - strand, within GFF1363at 219.772 kb on + strandat 219.773 kb on - strandat 219.857 kb on + strandat 219.857 kb on + strandat 219.858 kb on - strandat 219.905 kb on + strandat 219.906 kb on - strandat 220.237 kb on + strand, within GFF1364at 220.238 kb on - strand, within GFF1364at 220.238 kb on - strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.324 kb on + strand, within GFF1364at 220.324 kb on + strand, within GFF1364at 220.325 kb on - strand, within GFF1364at 220.325 kb on - strand, within GFF1364at 220.403 kb on - strand, within GFF1364at 220.403 kb on - strand, within GFF1364at 220.616 kb on - strand, within GFF1364at 220.730 kb on - strandat 220.759 kb on + strandat 220.760 kb on - strandat 220.803 kb on + strandat 220.803 kb on + strandat 220.804 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
remove
218,687 + -3.0
218,715 + -0.2
218,715 + -0.4
218,715 + -0.6
218,715 + -0.8
218,715 + +0.1
218,715 + -0.4
218,715 + -0.4
218,715 + -0.7
218,715 + -1.0
218,715 + -1.9
218,716 - +1.0
218,716 - -2.1
218,716 - -0.2
218,716 - +0.2
218,716 - -0.7
218,716 - -0.6
218,716 - +0.3
218,716 - -0.6
218,716 - +0.5
218,716 - -1.6
218,780 + -0.1
218,780 + -0.6
218,781 - -0.4
218,781 - -0.4
218,908 + +1.2
218,908 + -1.5
218,908 + +0.2
218,908 + -0.5
218,908 + +0.0
218,908 + -1.3
218,908 + -0.6
218,908 + -0.7
218,909 - -1.4
218,909 - +0.1
218,909 - +0.4
218,909 - -0.6
218,909 - -0.1
219,220 + GFF1363 0.33 -0.1
219,220 + GFF1363 0.33 -2.9
219,220 + GFF1363 0.33 -2.0
219,220 + GFF1363 0.33 -4.8
219,221 - GFF1363 0.33 -2.3
219,221 - GFF1363 0.33 -0.9
219,221 - GFF1363 0.33 -2.9
219,229 + GFF1363 0.34 -1.9
219,229 + GFF1363 0.34 -1.7
219,229 + GFF1363 0.34 -3.3
219,229 + GFF1363 0.34 -0.9
219,229 + GFF1363 0.34 -2.6
219,230 - GFF1363 0.34 -2.3
219,230 - GFF1363 0.34 -3.0
219,230 - GFF1363 0.34 -3.2
219,230 - GFF1363 0.34 -2.6
219,230 - GFF1363 0.34 -2.0
219,313 + GFF1363 0.43 -1.3
219,313 + GFF1363 0.43 -1.9
219,313 + GFF1363 0.43 -1.1
219,313 + GFF1363 0.43 -3.6
219,314 - GFF1363 0.43 -2.0
219,314 - GFF1363 0.43 -0.8
219,314 - GFF1363 0.43 -1.4
219,322 + GFF1363 0.44 -1.8
219,322 + GFF1363 0.44 -1.4
219,322 + GFF1363 0.44 -2.6
219,323 - GFF1363 0.44 -2.9
219,323 - GFF1363 0.44 -1.6
219,464 + GFF1363 0.59 -2.2
219,465 - GFF1363 0.59 -1.1
219,514 + GFF1363 0.64 -0.8
219,514 + GFF1363 0.64 -2.9
219,514 + GFF1363 0.64 -2.1
219,514 + GFF1363 0.64 -0.4
219,514 + GFF1363 0.64 -1.6
219,514 + GFF1363 0.64 -3.1
219,514 + GFF1363 0.64 -2.3
219,514 + GFF1363 0.64 -1.9
219,515 - GFF1363 0.65 -1.8
219,515 - GFF1363 0.65 -3.2
219,710 - GFF1363 0.85 -3.6
219,710 - GFF1363 0.85 -2.6
219,710 - GFF1363 0.85 -1.0
219,772 + -2.4
219,773 - -2.6
219,857 + -2.9
219,857 + -1.1
219,858 - +0.7
219,905 + -0.2
219,906 - -0.2
220,237 + GFF1364 0.37 +0.0
220,238 - GFF1364 0.38 -0.1
220,238 - GFF1364 0.38 +0.4
220,297 + GFF1364 0.45 -0.5
220,297 + GFF1364 0.45 -1.2
220,297 + GFF1364 0.45 -1.2
220,297 + GFF1364 0.45 -1.5
220,297 + GFF1364 0.45 -1.1
220,298 - GFF1364 0.45 -1.6
220,298 - GFF1364 0.45 -0.7
220,298 - GFF1364 0.45 +0.1
220,298 - GFF1364 0.45 -1.6
220,298 - GFF1364 0.45 -0.6
220,324 + GFF1364 0.48 -1.4
220,324 + GFF1364 0.48 +2.2
220,325 - GFF1364 0.48 -1.2
220,325 - GFF1364 0.48 +0.4
220,403 - GFF1364 0.57 +0.4
220,403 - GFF1364 0.57 +0.2
220,616 - GFF1364 0.82 +1.4
220,730 - -0.1
220,759 + +0.2
220,760 - -0.9
220,803 + -0.0
220,803 + -1.0
220,804 - -0.0

Or see this region's nucleotide sequence