Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1350 and GFF1351 are separated by 191 nucleotides GFF1351 and GFF1352 are separated by 103 nucleotides GFF1352 and GFF1353 are separated by 25 nucleotides
GFF1350 - Cytochrome c-type biogenesis protein Ccs1/ResB, at 203,112 to 205,265
GFF1350
GFF1351 - Cytochrome c4, at 205,457 to 206,071
GFF1351
GFF1352 - GTP-binding protein EngB, at 206,175 to 206,963
GFF1352
GFF1353 - Epoxide hydrolase, at 206,989 to 207,930
GFF1353
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1 at 204.934 kb on + strand, within GFF1350 at 204.934 kb on + strand, within GFF1350 at 205.037 kb on - strand, within GFF1350 at 205.100 kb on - strand at 205.378 kb on + strand at 205.378 kb on + strand at 205.379 kb on - strand at 205.379 kb on - strand at 205.379 kb on - strand at 205.379 kb on - strand at 205.379 kb on - strand at 205.379 kb on - strand at 205.379 kb on - strand at 205.379 kb on - strand at 205.379 kb on - strand at 205.398 kb on + strand at 205.398 kb on + strand at 205.398 kb on + strand at 205.398 kb on + strand at 205.399 kb on - strand at 205.399 kb on - strand at 205.399 kb on - strand at 205.399 kb on - strand at 205.399 kb on - strand at 205.399 kb on - strand at 205.399 kb on - strand at 205.412 kb on + strand at 205.412 kb on + strand at 205.412 kb on + strand at 205.412 kb on + strand at 205.412 kb on + strand at 205.412 kb on + strand at 205.412 kb on + strand at 205.412 kb on + strand at 205.412 kb on + strand at 205.413 kb on - strand at 205.413 kb on - strand at 205.413 kb on - strand at 205.413 kb on - strand at 205.413 kb on - strand at 205.413 kb on - strand at 205.414 kb on + strand at 205.414 kb on + strand at 205.414 kb on + strand at 205.415 kb on - strand at 205.477 kb on - strand at 205.477 kb on - strand at 205.587 kb on + strand, within GFF1351 at 205.587 kb on + strand, within GFF1351 at 205.588 kb on - strand, within GFF1351 at 205.588 kb on - strand, within GFF1351 at 205.588 kb on - strand, within GFF1351 at 205.588 kb on - strand, within GFF1351 at 205.698 kb on + strand, within GFF1351 at 205.698 kb on + strand, within GFF1351 at 205.698 kb on + strand, within GFF1351 at 205.698 kb on + strand, within GFF1351 at 205.699 kb on - strand, within GFF1351 at 205.699 kb on - strand, within GFF1351 at 205.750 kb on + strand, within GFF1351 at 205.750 kb on + strand, within GFF1351 at 205.750 kb on + strand, within GFF1351 at 205.774 kb on - strand, within GFF1351 at 205.878 kb on + strand, within GFF1351 at 205.878 kb on + strand, within GFF1351 at 205.878 kb on - strand, within GFF1351 at 205.879 kb on - strand, within GFF1351 at 205.879 kb on - strand, within GFF1351 at 205.879 kb on - strand, within GFF1351 at 205.965 kb on + strand, within GFF1351 at 205.965 kb on + strand, within GFF1351 at 205.965 kb on + strand, within GFF1351 at 205.965 kb on + strand, within GFF1351 at 205.965 kb on + strand, within GFF1351 at 205.965 kb on + strand, within GFF1351 at 205.965 kb on + strand, within GFF1351 at 205.965 kb on + strand, within GFF1351 at 205.965 kb on + strand, within GFF1351 at 205.966 kb on - strand, within GFF1351 at 205.966 kb on - strand, within GFF1351 at 205.966 kb on - strand, within GFF1351 at 205.966 kb on - strand, within GFF1351 at 205.966 kb on - strand, within GFF1351 at 205.966 kb on - strand, within GFF1351 at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 204,934 + GFF1350 0.85 -1.6 204,934 + GFF1350 0.85 -2.0 205,037 - GFF1350 0.89 -2.3 205,100 - -1.9 205,378 + +0.8 205,378 + +0.5 205,379 - +0.2 205,379 - -0.1 205,379 - +0.4 205,379 - +0.4 205,379 - -0.5 205,379 - -0.6 205,379 - -0.4 205,379 - +0.1 205,379 - -0.6 205,398 + +0.9 205,398 + +1.0 205,398 + -0.3 205,398 + -0.5 205,399 - -0.0 205,399 - +0.8 205,399 - +0.4 205,399 - -0.6 205,399 - +0.0 205,399 - +0.5 205,399 - -0.3 205,412 + -0.4 205,412 + -0.1 205,412 + +0.4 205,412 + -1.4 205,412 + +0.3 205,412 + -1.3 205,412 + +0.2 205,412 + -0.3 205,412 + +0.0 205,413 - -0.6 205,413 - -0.8 205,413 - +0.1 205,413 - -0.6 205,413 - -0.1 205,413 - -1.9 205,414 + -0.2 205,414 + -0.0 205,414 + -0.8 205,415 - +0.5 205,477 - +0.8 205,477 - +1.0 205,587 + GFF1351 0.21 +1.1 205,587 + GFF1351 0.21 -0.1 205,588 - GFF1351 0.21 +0.2 205,588 - GFF1351 0.21 +0.2 205,588 - GFF1351 0.21 +0.5 205,588 - GFF1351 0.21 +1.0 205,698 + GFF1351 0.39 +0.4 205,698 + GFF1351 0.39 +0.1 205,698 + GFF1351 0.39 +0.6 205,698 + GFF1351 0.39 +0.7 205,699 - GFF1351 0.39 +0.3 205,699 - GFF1351 0.39 +0.5 205,750 + GFF1351 0.48 +0.4 205,750 + GFF1351 0.48 +0.2 205,750 + GFF1351 0.48 +0.9 205,774 - GFF1351 0.52 -0.1 205,878 + GFF1351 0.68 +0.4 205,878 + GFF1351 0.68 +0.1 205,878 - GFF1351 0.68 +0.9 205,879 - GFF1351 0.69 +0.6 205,879 - GFF1351 0.69 +0.6 205,879 - GFF1351 0.69 +0.8 205,965 + GFF1351 0.83 +0.4 205,965 + GFF1351 0.83 +0.1 205,965 + GFF1351 0.83 +0.8 205,965 + GFF1351 0.83 +0.9 205,965 + GFF1351 0.83 -1.6 205,965 + GFF1351 0.83 +0.5 205,965 + GFF1351 0.83 +0.9 205,965 + GFF1351 0.83 +1.0 205,965 + GFF1351 0.83 +0.2 205,966 - GFF1351 0.83 +0.4 205,966 - GFF1351 0.83 +1.2 205,966 - GFF1351 0.83 +0.9 205,966 - GFF1351 0.83 +0.2 205,966 - GFF1351 0.83 -0.7 205,966 - GFF1351 0.83 +0.4 206,147 + -0.2 206,147 + +0.6 206,147 + +0.1 206,148 - +0.0
Or see this region's nucleotide sequence