Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1229 and GFF1230 are separated by 74 nucleotides GFF1230 and GFF1231 are separated by 102 nucleotides GFF1231 and GFF1232 overlap by 4 nucleotides GFF1232 and GFF1233 are separated by 63 nucleotides
GFF1229 - Thermonuclease family protein, at 91,677 to 92,102
GFF1229
GFF1230 - hypothetical protein, at 92,177 to 92,398
GFF1230
GFF1231 - hypothetical protein, at 92,501 to 93,073
GFF1231
GFF1232 - hypothetical protein, at 93,070 to 93,483
GFF1232
GFF1233 - Outer membrane protein romA, at 93,547 to 94,635
GFF1233
Position (kb) 93
94 Strain fitness (log2 ratio) -2
-1
0
1
2 at 92.098 kb on + strand at 92.098 kb on + strand at 92.098 kb on + strand at 92.098 kb on + strand at 92.099 kb on - strand at 92.099 kb on - strand at 92.322 kb on + strand, within GFF1230 at 92.322 kb on + strand, within GFF1230 at 92.322 kb on + strand, within GFF1230 at 92.322 kb on + strand, within GFF1230 at 92.323 kb on - strand, within GFF1230 at 92.323 kb on - strand, within GFF1230 at 92.337 kb on + strand, within GFF1230 at 92.908 kb on - strand, within GFF1231 at 93.323 kb on + strand, within GFF1232 at 93.323 kb on + strand, within GFF1232 at 93.323 kb on + strand, within GFF1232 at 93.324 kb on - strand, within GFF1232 at 93.324 kb on - strand, within GFF1232 at 93.479 kb on + strand at 93.479 kb on + strand at 93.479 kb on + strand at 93.479 kb on + strand at 93.480 kb on - strand at 93.480 kb on - strand at 93.480 kb on - strand at 93.480 kb on - strand at 93.480 kb on - strand at 93.480 kb on - strand at 93.480 kb on - strand at 93.480 kb on - strand at 93.480 kb on - strand at 93.514 kb on + strand at 93.722 kb on + strand, within GFF1233 at 93.722 kb on + strand, within GFF1233 at 93.722 kb on + strand, within GFF1233 at 93.722 kb on + strand, within GFF1233 at 93.723 kb on - strand, within GFF1233 at 93.723 kb on - strand, within GFF1233 at 93.794 kb on + strand, within GFF1233 at 93.794 kb on + strand, within GFF1233 at 93.794 kb on + strand, within GFF1233 at 93.794 kb on + strand, within GFF1233 at 93.794 kb on + strand, within GFF1233 at 93.795 kb on - strand, within GFF1233 at 93.803 kb on + strand, within GFF1233 at 93.803 kb on + strand, within GFF1233 at 93.804 kb on - strand, within GFF1233 at 93.804 kb on - strand, within GFF1233 at 93.804 kb on - strand, within GFF1233 at 93.876 kb on - strand, within GFF1233 at 94.106 kb on + strand, within GFF1233 at 94.106 kb on + strand, within GFF1233 at 94.106 kb on + strand, within GFF1233 at 94.106 kb on + strand, within GFF1233 at 94.106 kb on + strand, within GFF1233 at 94.107 kb on - strand, within GFF1233 at 94.107 kb on - strand, within GFF1233 at 94.160 kb on + strand, within GFF1233 at 94.160 kb on + strand, within GFF1233 at 94.161 kb on - strand, within GFF1233 at 94.161 kb on - strand, within GFF1233 at 94.295 kb on + strand, within GFF1233 at 94.296 kb on - strand, within GFF1233
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 92,098 + -0.5 92,098 + +0.1 92,098 + +0.8 92,098 + -0.1 92,099 - -0.4 92,099 - +0.0 92,322 + GFF1230 0.65 +0.9 92,322 + GFF1230 0.65 -0.6 92,322 + GFF1230 0.65 +0.1 92,322 + GFF1230 0.65 +0.3 92,323 - GFF1230 0.66 -0.1 92,323 - GFF1230 0.66 -0.4 92,337 + GFF1230 0.72 +0.6 92,908 - GFF1231 0.71 -2.1 93,323 + GFF1232 0.61 +0.1 93,323 + GFF1232 0.61 -0.1 93,323 + GFF1232 0.61 +0.5 93,324 - GFF1232 0.61 +1.8 93,324 - GFF1232 0.61 +0.4 93,479 + +0.1 93,479 + +0.2 93,479 + +1.3 93,479 + -0.5 93,480 - +0.2 93,480 - +0.1 93,480 - -0.4 93,480 - +1.4 93,480 - +0.1 93,480 - +0.1 93,480 - +0.7 93,480 - -0.1 93,480 - -0.8 93,514 + -0.5 93,722 + GFF1233 0.16 +0.2 93,722 + GFF1233 0.16 +0.6 93,722 + GFF1233 0.16 +0.1 93,722 + GFF1233 0.16 -0.2 93,723 - GFF1233 0.16 +0.4 93,723 - GFF1233 0.16 -0.5 93,794 + GFF1233 0.23 +0.7 93,794 + GFF1233 0.23 -0.7 93,794 + GFF1233 0.23 +0.0 93,794 + GFF1233 0.23 -0.2 93,794 + GFF1233 0.23 -0.2 93,795 - GFF1233 0.23 -0.3 93,803 + GFF1233 0.24 +0.2 93,803 + GFF1233 0.24 -0.6 93,804 - GFF1233 0.24 +0.1 93,804 - GFF1233 0.24 -0.0 93,804 - GFF1233 0.24 -0.4 93,876 - GFF1233 0.30 -1.3 94,106 + GFF1233 0.51 +0.7 94,106 + GFF1233 0.51 -0.6 94,106 + GFF1233 0.51 +0.2 94,106 + GFF1233 0.51 -1.4 94,106 + GFF1233 0.51 -0.4 94,107 - GFF1233 0.51 -1.0 94,107 - GFF1233 0.51 +0.6 94,160 + GFF1233 0.56 +1.7 94,160 + GFF1233 0.56 -1.6 94,161 - GFF1233 0.56 -0.5 94,161 - GFF1233 0.56 +0.4 94,295 + GFF1233 0.69 -0.2 94,296 - GFF1233 0.69 +0.2
Or see this region's nucleotide sequence