Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1194

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1193 and GFF1194 are separated by 17 nucleotidesGFF1194 and GFF1195 are separated by 422 nucleotides GFF1193 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 49,887 to 52,856 GFF1193 GFF1194 - Formate dehydrogenase subunit or accessory protein, at 52,874 to 53,107 GFF1194 GFF1195 - Sigma-54 dependent response regulator, at 53,530 to 54,912 GFF1195 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 51.896 kb on - strand, within GFF1193at 51.896 kb on - strand, within GFF1193at 51.896 kb on - strand, within GFF1193at 51.913 kb on + strand, within GFF1193at 51.913 kb on + strand, within GFF1193at 51.913 kb on + strand, within GFF1193at 51.913 kb on + strand, within GFF1193at 51.913 kb on + strand, within GFF1193at 51.914 kb on - strand, within GFF1193at 51.914 kb on - strand, within GFF1193at 51.914 kb on - strand, within GFF1193at 51.914 kb on - strand, within GFF1193at 51.914 kb on - strand, within GFF1193at 51.914 kb on - strand, within GFF1193at 51.914 kb on - strand, within GFF1193at 51.914 kb on - strand, within GFF1193at 51.914 kb on - strand, within GFF1193at 52.129 kb on + strand, within GFF1193at 52.129 kb on + strand, within GFF1193at 52.129 kb on + strand, within GFF1193at 52.129 kb on + strand, within GFF1193at 52.129 kb on + strand, within GFF1193at 52.129 kb on + strand, within GFF1193at 52.130 kb on - strand, within GFF1193at 52.130 kb on - strand, within GFF1193at 52.130 kb on - strand, within GFF1193at 52.130 kb on - strand, within GFF1193at 52.130 kb on - strand, within GFF1193at 52.162 kb on + strand, within GFF1193at 52.162 kb on + strand, within GFF1193at 52.163 kb on - strand, within GFF1193at 52.288 kb on + strand, within GFF1193at 52.288 kb on + strand, within GFF1193at 52.288 kb on + strand, within GFF1193at 52.288 kb on + strand, within GFF1193at 52.288 kb on + strand, within GFF1193at 52.288 kb on + strand, within GFF1193at 52.289 kb on - strand, within GFF1193at 52.289 kb on - strand, within GFF1193at 52.327 kb on + strand, within GFF1193at 52.327 kb on + strand, within GFF1193at 52.327 kb on + strand, within GFF1193at 52.328 kb on - strand, within GFF1193at 52.328 kb on - strand, within GFF1193at 52.328 kb on - strand, within GFF1193at 52.414 kb on + strand, within GFF1193at 52.414 kb on + strand, within GFF1193at 52.415 kb on - strand, within GFF1193at 52.415 kb on - strand, within GFF1193at 52.415 kb on - strand, within GFF1193at 52.415 kb on - strand, within GFF1193at 52.415 kb on - strand, within GFF1193at 52.415 kb on - strand, within GFF1193at 52.415 kb on - strand, within GFF1193at 52.415 kb on - strand, within GFF1193at 52.893 kb on + strandat 52.893 kb on + strandat 52.894 kb on - strandat 52.894 kb on - strandat 52.894 kb on - strandat 52.894 kb on - strandat 52.894 kb on - strandat 52.894 kb on - strandat 52.894 kb on - strandat 52.896 kb on + strandat 52.896 kb on + strandat 52.896 kb on + strandat 52.896 kb on + strandat 52.896 kb on + strandat 52.897 kb on - strandat 52.897 kb on - strandat 52.897 kb on - strandat 52.923 kb on + strand, within GFF1194at 53.161 kb on + strandat 53.162 kb on - strandat 53.172 kb on + strandat 53.172 kb on + strandat 53.173 kb on - strandat 53.190 kb on + strandat 53.190 kb on + strandat 53.190 kb on + strandat 53.190 kb on + strandat 53.190 kb on + strandat 53.190 kb on + strandat 53.190 kb on + strandat 53.190 kb on + strandat 53.190 kb on + strandat 53.190 kb on + strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.191 kb on - strandat 53.205 kb on + strandat 53.376 kb on - strandat 53.488 kb on - strandat 53.509 kb on + strandat 53.509 kb on + strandat 53.510 kb on - strandat 53.510 kb on - strandat 53.510 kb on - strandat 53.517 kb on - strandat 53.932 kb on + strand, within GFF1195at 53.933 kb on - strand, within GFF1195at 53.933 kb on - strand, within GFF1195

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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51,896 - GFF1193 0.68 -0.3
51,896 - GFF1193 0.68 +1.2
51,896 - GFF1193 0.68 -0.1
51,913 + GFF1193 0.68 +0.0
51,913 + GFF1193 0.68 +0.4
51,913 + GFF1193 0.68 +0.3
51,913 + GFF1193 0.68 +0.1
51,913 + GFF1193 0.68 +0.5
51,914 - GFF1193 0.68 -0.6
51,914 - GFF1193 0.68 -0.0
51,914 - GFF1193 0.68 +0.0
51,914 - GFF1193 0.68 +0.0
51,914 - GFF1193 0.68 -1.1
51,914 - GFF1193 0.68 -0.3
51,914 - GFF1193 0.68 +0.3
51,914 - GFF1193 0.68 -0.3
51,914 - GFF1193 0.68 +0.1
52,129 + GFF1193 0.75 +0.1
52,129 + GFF1193 0.75 +0.5
52,129 + GFF1193 0.75 -2.1
52,129 + GFF1193 0.75 -0.1
52,129 + GFF1193 0.75 -0.2
52,129 + GFF1193 0.75 +0.2
52,130 - GFF1193 0.76 +0.4
52,130 - GFF1193 0.76 +0.1
52,130 - GFF1193 0.76 +0.0
52,130 - GFF1193 0.76 -0.6
52,130 - GFF1193 0.76 -0.9
52,162 + GFF1193 0.77 +1.4
52,162 + GFF1193 0.77 -0.9
52,163 - GFF1193 0.77 +0.1
52,288 + GFF1193 0.81 -0.1
52,288 + GFF1193 0.81 +0.0
52,288 + GFF1193 0.81 +0.8
52,288 + GFF1193 0.81 -0.3
52,288 + GFF1193 0.81 -0.9
52,288 + GFF1193 0.81 +0.2
52,289 - GFF1193 0.81 +0.2
52,289 - GFF1193 0.81 -0.2
52,327 + GFF1193 0.82 +0.1
52,327 + GFF1193 0.82 -1.3
52,327 + GFF1193 0.82 -1.1
52,328 - GFF1193 0.82 -0.6
52,328 - GFF1193 0.82 -0.4
52,328 - GFF1193 0.82 +0.0
52,414 + GFF1193 0.85 -0.1
52,414 + GFF1193 0.85 +1.0
52,415 - GFF1193 0.85 +0.3
52,415 - GFF1193 0.85 -0.6
52,415 - GFF1193 0.85 +0.0
52,415 - GFF1193 0.85 -0.6
52,415 - GFF1193 0.85 -0.3
52,415 - GFF1193 0.85 -0.9
52,415 - GFF1193 0.85 +0.1
52,415 - GFF1193 0.85 -0.2
52,893 + -0.6
52,893 + +0.6
52,894 - -0.6
52,894 - +0.1
52,894 - -1.5
52,894 - -0.6
52,894 - -1.4
52,894 - -1.1
52,894 - -0.4
52,896 + -1.7
52,896 + +0.9
52,896 + +0.1
52,896 + +0.2
52,896 + -0.1
52,897 - -0.4
52,897 - +0.0
52,897 - +1.1
52,923 + GFF1194 0.21 +1.0
53,161 + -0.5
53,162 - +0.1
53,172 + +1.4
53,172 + +0.2
53,173 - -0.6
53,190 + +0.1
53,190 + +0.1
53,190 + -0.4
53,190 + -0.2
53,190 + -0.3
53,190 + -0.3
53,190 + +0.0
53,190 + +0.3
53,190 + -0.2
53,190 + -0.2
53,191 - -0.4
53,191 - +0.4
53,191 - +0.7
53,191 - +0.1
53,191 - -0.7
53,191 - -1.0
53,191 - +0.8
53,191 - -0.1
53,191 - +0.2
53,191 - -0.1
53,191 - -0.4
53,205 + +0.1
53,376 - +0.4
53,488 - -0.9
53,509 + -0.1
53,509 + -0.3
53,510 - -0.6
53,510 - -0.1
53,510 - +0.6
53,517 - -0.3
53,932 + GFF1195 0.29 -0.4
53,933 - GFF1195 0.29 -0.5
53,933 - GFF1195 0.29 +1.3

Or see this region's nucleotide sequence